Sequence
atgc intronic sequence ATGC exonic sequencegttggtgctcttttttccttttcttattttaaacttgtttgcatgttctgaagtccttagctacattgttgatggttattgtggaataaagatctagttttcctctgtttggttattgtcttgcattcacatttttatatttcagGCTGGTGTTTTAGCTGGAGATGTTAGTAACATTGTGCTATTGGATGTGACACCATTGTCTCTGGGTTTGGAAACCCTGGGTGGTGTCATGACAAAGATCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0041g01230.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: PP1S153_153V6.1 (Physcomitrella patens), 3'ss of exon 4
gttggtgctcttttttccttttcttattttaaacttgtttgcatgttctgaagtccttagctacattgttgatggttattgtggaataaagatctagttttcctctgtttggttattgtcttgcattcacatttttatatttcagGCTGGTGTTTTAGCTGGAGATGTTAGTAACATTGTGCTATTGGATGTGACACCATTGTCTCTGGGTTTGGAAACCCTGGGTGGTGTCATGACAAAGATCA
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--------------------------------------------gtggtttagcaagaggtgtcggggttggtggtgtgtgcgtgcgttgtcattgttgcgggtgggcagcacgaatgagaaggacggggggtgttgaatg-cagGCCGGTGTTTTGGCTGGTGAAGTGAGCGACATTGTTCTGCTGGACGTGACGCCTCTGTCTCTGGGTTTGGAGACGCTGGGGGGTGTGATGACGAAGATCA
upper sequence: Vv18s0041g01230.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: PP1S6_146V6.1 (Physcomitrella patens), 3'ss of exon 4
gttggtgctcttttttc-----cttttcttattttaaacttgtttgcatgttctgaagtccttagcta--cattgttgatggt---tattgtggaataaagatctagttttcctctgtttgg-ttattgtc--------ttgcattcacattttta------tatttcagGCTGGTGTTTTAGCTGGAGATGTTAGTAACATTGTGCTATTGGATGTGACACCATTGTCTCTGGGTTTGGAAACCCTGGGTGGTGTCATGACAAAGATCA
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gtttgaaattttacctcgatacctactcatctctgtcacgagtatggatgg-ctaaggggtttagtttgttattcctaatggggggtatcctgaggt--tgttttagtagtctgatgaatggcttatcatcgacattttctgtattaacaattgtgggaaattactacagGCTGGTGTTTTGGCTGGTGAAGTCAGCGACATTGTTCTTCTGGATGTGACGCCTCTGTCTTTGGGTTTGGAGACGTTGGGTGGTGTGATGACGAAGATTA
upper sequence: Vv18s0041g01230.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: EFJ32911 (Selaginella moellendorffii), 3'ss of exon 7
gttggtgctcttttttccttttcttattttaaacttgtttgcatgttctgaagtccttagctacattgttgatggttattgtggaataaagatctagttttcctctgtttggttattgtcttgcattcacatttttatatttcagGCTGGTGTTTTAGCTGGAGATGTTAGTAACATTGTGCTATTGGATGTGACACCATTGTCTCTGGGTTTGGAAACCCTGGGTGGTGTCATGACAAAGATCA
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-------------------------------------------------------------------------------------gtatgattctcacatttaaaagagaaagaatggtatttatctttcttttccttcgtttagGCTGGCATTCTGGCTGGCGAAGTCAGCAAGGTGGTGCTACTGGACGTGACCTCACTGTCGCTGGGTCTGGAAACTCTGGGTGGTGTCATGACAAAGGTCA
upper sequence: Vv18s0041g01230.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: EFJ15775 (Selaginella moellendorffii), 3'ss of exon 6
gttggtgctcttttttccttttcttattttaaacttgtttgcatgttctgaagtccttagctacattgttgatggttattgtggaataaagatctagttttcctctgtttggttattgtcttgcattcacatttttatatttcagGCTGGTGTTTTAGCTGGAGATGTTAGTAACATTGTGCTATTGGATGTGACACCATTGTCTCTGGGTTTGGAAACCCTGGGTGGTGTCATGACAAAGATCA
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-------------------------------------------------------------------------------------gtatgattctcacatttgaaagagaaagagtggtatttatctttcttttccttcgtttagGCTGGCATTCTGGCTGGCGAAGTCAGCAAGGTGGTGCTACTGGACGTGACCTCACTGTCGCTGGGTCTGGAAACTCTGGGTGGTGTCATGACAAAGGTCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gatctagttttcctctgtttggttattgtcttgcattcacatttttatatttcagGCTGGTGTTTTAGCTGGAGATGTTAGTAACATTGTGCTATTGGATGTGACACCATTGTCTCTGGGTTTGGAAACCCTGGGTGGTGTCATGACAAAGATCA
cattttt CT-rich tract
attcacatttttatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttggtgctcttttttccttttcttattttaaacttgtttgcatgttctgaagtccttagctacattgttgatggttattgtggaataaagatctagttttcctctgtttggttattgtcttgcattcacatttttatatttcagGCTGGTGTTTTAGCTGGAGATGTTAGTAACATTGTGCTATTGGATGTGACACCATTGTCTCTGGGTTTGGAAACCCTGGGTGGTGTCATGACAAAGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA