Sequence
atgc intronic sequence ATGC exonic sequencegtaatttactgttattggattaaaagtttctccatagagtatgaattaacacgtcttttttccagGTTGACTTGAAAACATTTGCGAGTTGGGATGATTCACCTGAGAAGATGATGATGGATGTTATGTCTGATCCTAACAGAGTTAATCGGGAGGACCGCTAAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g13900.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA04G39340.1 (Glycine max), 3'ss of exon 6
--------------------------------------gtaatttactgttattggattaaaagtttctccatagagtatgaattaacacgtcttttttccagGTTGACTTGAAAACATTTGCGAGTTGGGATGATTCACCTGAGAAGATGATGATGGATGTTATGTCTGATCCTAACAGAGTTAATCGGGAGGACCGCTAAT
||| ||| || | || ||| | || | | || || ||| || | ||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| | ||||||||||| || || ||| ||||||| |
gtaccctaccttgtcctgttctccgattagtcattacaaatattaacttttgataaatcaaagaa--cagca-ataacatttttttgtcattctattgtttagGTTGACTTGAAGACATTTGCGAGTTGGGAGGATTCACCTGAGAAAATGATGATGGACATGATGTCTGATCCAAATGCTGTACGAAAGGAAGACCGCTGAG
upper sequence: Vv18s0001g13900.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA06G15580.1 (Glycine max), 3'ss of exon 10
--------------------gtaatttactgttattggattaaaagtttctccatagagtatgaattaacacgtcttttttccagGTTGACTTGAAAACATTTGCGAGTTGGGATGATTCACCTGAGAAGATGATGATGGATGTTATGTCTGATCCTAACAGAGTTAATCGGGAGGACCGCTAAT
||| ||| || | || ||| | ||| | | ||| || ||| |||| |||||||||| || ||||| || |||||||| |||||||||||||| ||||||||||| | || || ||||| || ||| |||| |||| || |
gtatctgactagttgttacaaatattaacttttgataaatcaaagaacag-caataacattttg-ttatcat-tctattttgtagGTTGACTTAAAGACATTCGCAAGTTGGGAGGATTCACCTGAGAAAATGATGATGGACATGATCTCCGATCCAAATGCTGTTCGAAGGGAAGACCACTGAG
upper sequence: Vv18s0001g13900.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT5G39590.1 (Arabidopsis thaliana), 3'ss of exon 6
--------------gtaatttactgttat-tggattaaaagtttctccatagagtatgaatt-aacac----gtcttttttccagGTTGACTTGAAAACATTTGCGAGTTGGGATGATTCACCTGAGAAGATGATGATGGATGTTATGTCTGATCCTAACAGAGTTAATCGGGAGGACCGCTAAT
|| | | | | |||| | | | | | | | |||| |||| || || | | ||| | ||||||||||| ||| ||| ||||| |||||||||||||| |||||||||||| | ||| | ||||||| || ||| || | ||||
gtaaaagaaaaacaccaaaagagcatgacatctattatgacatgcgcaaaggttttcaaatttgacacctttgttttatctgcagATCGACTTGAAAACGTTTACGAACTGGGAAGATTCACCTGAGAAAATGATGATGGATATGATGGGTAATCCTAATGCTCCTAGAAAGGAAGAGAGGTAAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttattggattaaaagtttctccatagagtatgaattaacacgtcttttttccagGTTGACTTGAAAACATTTGCGAGTTGGGATGATTCACCTGAGAAGATGATGATGGATGTTATGTCTGATCCTAACAGAGTTAATCGGGAGGACCGCTAAT
aattaac putative branch site (score: 2)
cacgtcttttttcc CT-rich tract
attaaaagttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaatttactgttattggattaaaagtttctccatagagtatgaattaacacgtcttttttccagGTTGACTTGAAAACATTTGCGAGTTGGGATGATTCACCTGAGAAGATGATGATGGATGTTATGTCTGATCCTAACAGAGTTAATCGGGAGGACCGCTAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA