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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcttcagcttatttttccattaagttggaacttcatcgtccttctttcacttccaatgatctattggaatatttgcttaaattttcattagggttcggctcagtctaatattcttgttttttcaattttgaaaaacagGCAGAGAAACCCAGACTAAATTTTAAGGACAAGTATTCTGAATCATATAGAAATGCCCACCCATCAGCGCCATTGTTTGTTCCCTGGGTCTCTGGAGTTG

Basic information

species Vitis vinifera
transcript Vv18s0001g10750.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g10750.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA06G04180.1 (Glycine max), 3'ss of exon 6
gtaag--cttcagcttatttttccattaag---ttggaacttcatcgtccttctttcacttccaatgat-ctattgga----atattt------gctt--aaattttcatt-----agggttcggct----------cagtctaatattcttgttttttcaattttgaaaaacagGCAGAGAAACCCAGACTAAATTTTAAGGACAAGTATTCTGAATCATATAGAAATGCCCACCCATCAGCGCCATTGTTTGTTCCCTGGGTCTCTGGAGTTG
|||||  ||||    | |  || ||| | |   || ||   |  |  ||  ||| |    |   |  || ||||||      ||||||      | ||  ||||||||||      |   ||   ||          | | ||||||| ||   |  || |  |||  ||  ||||| ||||||||  |||||||||||||||| |||||| ||||||||||| ||||| | || || || || ||| || | ||||| ||||||||||||||| 
gtaagaacttctctatgtacttgcataatggcttttgatacttttattctctctgtggtctgagaaaatactattgagttttatattttgtctggtttgaaaattttcatcttgtgatcatttatctttccttctcgctggctaatatactc--taattgatattttgaatccagGCTGAGAAACCTCGACTAAATTTTAAGGATAAGTATCCTGAATCATATCGAAATTCACATCCTTCTGCACCAGTGATCGTTCCATGGGTCTCTGGAGTTA

upper sequence: Vv18s0001g10750.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA04G04000.1 (Glycine max), 3'ss of exon 6
gtaagcttcagcttatttttccattaagttggaacttcatcgtccttctttcacttccaatgatctattggaatatttgcttaaattttcattagggttcggctcagtctaatattcttgttttttcaattttgaaaaacagGCAGAGAAACCCAGACTAAATTTTAAGGACAAGTATTCTGAATCATATAGAAATGCCCACCCATCAGCGCCATTGTTTGTTCCCTGGGTCTCTGGAGTTG
                                      |          || |       |||   | |  || |||   ||||   || |||     ||  | | | ||||||| ||   |  || |  |||  ||  ||||| ||||||||  || ||||||||||||| |||||| ||||||||||| ||||| | || || || || ||| || | ||||| ||||||||||||||| 
--------------------------------------aaaaattagaatttagaaaagttgagggactaaaaaattaa-ttaaccctttatttttcctct-cgctggctaatatactc--taattgatattttgaatccagGCTGAGAAACCTCGATTAAATTTTAAGGATAAGTATCCTGAATCATATCGAAATTCACATCCTTCTGCACCAGTGATCGTTCCGTGGGTCTCTGGAGTTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcattagggttcggctcagtctaatattcttgttttttcaattttgaaaaacagGCAGAGAAACCCAGACTAAATTTTAAGGACAAGTATTCTGAATCATATAGAAATGCCCACCCATCAGCGCCATTGTTTGTTCCCTGGGTCTCTGGAGTTG
                   gtctaat  putative branch site (score: 3)
                      taatattcttgttttt  TA-rich tract