1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ggcatatccttttgccatttatgagattctttaagataacctcttactcaggagaaactttttgtatttgattgatttatacattgatttcttcttgcagCTTATTAGACTGCCTCGAGCTCCAACTGTTGACAAAATATTGAAGAAGTATCTTGATTACAGGATAAAGAGGGATGGCAT
species | Vitis vinifera |
transcript | Vv18s0001g09710.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGAAGAAGCAACTAGTTGATGATTGTGAATTCATTACTCATCTGGGCCAG CTTGTTAGACTGCCTCGAGCTCCAACTGTTGACAAAATATTGAAGAAGTATEST: gi|27584092|gb|CB006787.1|CB006787
genomic: TGAAGAAGCAACTAGTTGATGATTGTGAATTCATTACTCATCTGGGCCAGgtagttatat ... cttcttgcagCTTATTAGACTGCCTCGAGCTCCAACTGTTGACAAAATATTGAAGAAGTAT
EST: TGAAGAAGCAACTAGTTGATGATTGTGAATTCATTACTCATCTGGGCCAG CTTGTTAGACTGCCTCGAGCTCCAACTGTTGACAAAATATTGAAGAAGTATEST: gi|30303537|gb|CB980331.1|CB980331
genomic: TGAAGAAGCAACTAGTTGATGATTGTGAATTCATTACTCATCTGGGCCAGgtagttatat ... cttcttgcagCTTATTAGACTGCCTCGAGCTCCAACTGTTGACAAAATATTGAAGAAGTAT
EST: TGAAGAAGCAACTAGTTGATGATTGTGAATTCATTACTCATCTGGGCCAG CTTGTTAGACTGCCTCGAGCTCCAACTGTTGACAAAATATTGAAGAAGTATEST: gi|71877948|gb|DT027003.1|DT027003
genomic: TGAAGAAGCAACTAGTTGATGATTGTGAATTCATTACTCATCTGGGCCAGgtagttatat ... cttcttgcagCTTATTAGACTGCCTCGAGCTCCAACTGTTGACAAAATATTGAAGAAGTAT
EST: TGAAGAAGCAACTAGTTGATGATTGTGAATTCATTACTCATCTGGGCCAG CTTGTTAGACTGCCTCGAGCTCCAACTGTTGACAAAATATTGAEST: gi|30133633|gb|CB918972.1|CB918972
genomic: TGAAGAAGCAACTAGTTGATGATTGTGAATTCATTACTCATCTGGGCCAGgtagttatat ... cttcttgcagCTTATTAGACTGCCTCGAGCTCCAACTGTTGACAAAATATTGA
EST: TGAAGAAGCAACTAGTTGATGATTGTGAATTCATTACTCATCTGGGCCAG CTTGTTAGACTGCCTCGAGCTCCAACTGTTGACAAAATATTGAAGAAGTAT
genomic: TGAAGAAGCAACTAGTTGATGATTGTGAATTCATTACTCATCTGGGCCAGgtagttatat ... cttcttgcagCTTATTAGACTGCCTCGAGCTCCAACTGTTGACAAAATATTGAAGAAGTAT
actcaggagaaactttttgtatttgattgatttatacattgatttcttcttgcagCTTATTAGACTGCCTCGAGCTCCAACTGTTGACAAAATATTGAAGAAGTATCTTGATTACAGGATAAAGAGGGATGGCAT
tttcttcttgc CT-rich tract
aaactttttgtatttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggcatatccttttgccatttatgagattctttaagataacctcttactcaggagaaactttttgtatttgattgatttatacattgatttcttcttgcagCTTATTAGACTGCCTCGAGCTCCAACTGTTGACAAAATATTGAAGAAGTATCTTGATTACAGGATAAAGAGGGATGGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- catatcc
- - - - - -ttgccat
- - - - - - - - - - - - - - - - aagataa
- - - - - - - - - - - - - - - - - - - - - - - - - ggagaaa