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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagtgcttttattgtcaccaggatccaatttcattatgtagtgctatagtatcttcagctcctgtctgactttgtgccaaatatgtttccagGAGGTAGAAACAATTCCTGCTTATCCAGATATATGTTTTGCAGTTGATGATTTCGATTCCACCTTTGATGCAGTG

Basic information

species Vitis vinifera
transcript Vv18s0001g08720.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g08720.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA06G05100.2 (Glycine max), 3'ss of exon 6
--------gcaagtgcttttattgtcaccaggatccaatttcattatgtagtgctatagtatcttcagctcctgtctgactttgtgccaaatatgtttccagGAGGTAGAAACAATTCCTGCTTATCCAGATATATGTTTTGCAGTTGATGATTTCGATTCCACCTTTGATGCAGTG
         |   |  |||  | |  || | ||   |||   ||| | |   | || | |||  |    |      | ||  ||      | |||| |  |||| || ||||| | |||||||||||||||||||||||| ||| |||||||||| || ||||| |||||||| |||
gcaagtatacctatcttttcttaggaacaaagaatgaatactattgtttttagatacattataattttattgacaattacactgccattgacatgtgtatagGAAGTGGAAACGACTCCTGCTTATCCAGATATATGTTTCGCAATTGATGATTTTGACTCCACTTTTGATGCTGTG

upper sequence: Vv18s0001g08720.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA04G05020.1 (Glycine max), 3'ss of exon 6
-------------------------------------gcaagtgcttttattgtcaccaggatc----------caatttcattatgtagtgctatagtatcttcagctcctgtc-----tgactttgtgccaaatatgtttccagGAGGTAGAAACAATTCCTGCTTATCCAGATATATGTTTTGCAGTTGATGATTTCGATTCCACCTTTGATGCAGTG
                                       |  |  | ||| | ||   |||| |           ||||  ||  | | ||  |    ||  ||    |  | |      | ||  |||     | |||| |  |||| || ||||| | |||||||||||||||||||||||| ||| |||||||||| || ||||| |||||||| |||
gtaaattttcaattggactctgaaaaggcaagtttacctatcttttcttaatatccttaggaacaaagaataaataattaaatactcttgtttttagatactttttaattttattgacaattacactgtaattgacatgtgtatagGAAGTGGAAACGACTCCTGCTTATCCAGATATATGTTTCGCAATTGATGATTTTGACTCCACTTTTGATGCTGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77586421|gb|DV222336.1|DV222336
EST:     CTGTATATGCATCTCCAAGTCGAGTTGAGTTCCATTTGGATTCAAAAAAG                         GAGGTAGAAACAATTCCTGCTTATCCAGATATATGTTTTGCAGTTGATGAT
genomic: CTGTATATGCATCTCCAAGTCGAGTTGAGTTCCATTTGGATTCAAAAAAGgcaagtgctt ... atgtttccagGAGGTAGAAACAATTCCTGCTTATCCAGATATATGTTTTGCAGTTGATGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtagtgctatagtatcttcagctcctgtctgactttgtgccaaatatgtttccagGAGGTAGAAACAATTCCTGCTTATCCAGATATATGTTTTGCAGTTGATGATTTCGATTCCACCTTTGATGCAGTG
                          gtctgac  putative branch site (score: 3)
                                              tgtttcc  putative PPT
                                         aaatatgttt  TA-rich tract