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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagcccttgttattttcatttatgttttaagggcttttaatgtagtcattgctggaaattaaatgcctcaattggtggtactgagcgagttttagATTGTTGAAATAGAAACAGTGCCAGGACCTTATGAGATTCAGTATGATGAAGAATGGTTGGCAATAACACGGAAGTTCAACTCTATCTTTCCTTTAACCA

Basic information

species Vitis vinifera
transcript Vv18s0001g08180.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g08180.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os03g51540.1 (Oryza sativa), 3'ss of exon 6
gtagcccttgttatt---ttcatttatgttttaagggcttttaatgtagtcattgctggaaattaaatgcctcaattggtg-gtactgagcga---gttttagATTGTTGAAATAGAAACAGTGCCAGGACCTTATGAGATTCAGTATGATGAAGAATGGTTGGCAATAACACGGAAGTTCAACTCTATCTTTCCTTTAACCA
||  || || |||     ||||    | |||      ||| ||||  | |  ||||       |  |  | |   ||  || |  ||   | |    |||||| |  | || ||   | | |  ||||||||  ||||||| |||||||||||||||||| | |||||||||||||| ||||||  | | ||  | |||||  
gtgccctttattacctgattcaggattatttcttatccttgtaattaaatt-ttgcattttgctgtacacatttgtttctgagggcttgccaatccattttagGTAATAGACATTCCATCCGGTCCAGGACCACATGAGATCCAGTATGATGAAGAATGGCTTGCAATAACACGGAAATTCAACAATGTTTTCTCCTTAACTC

upper sequence: Vv18s0001g08180.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G461145_T01 (Zea mays), 3'ss of exon 7
gtagcccttgttattttcatttatgttttaagggcttttaatgtagtcattgctggaaattaaatgcctcaattggtggtactgagcgagttttagATTGTTGAAATAGAAACAGTGCCAGGACCTTATGAGATTCAGTATGATGAAGAATGGTTGGCAATAACACGGAAGTTCAACTCTATCTTTCCTTTAACCA
||| | ||  ||  |||||      |||  |    | |||||  |    ||  | | |  |   ||  |   |||  | ||   |     |||||| || | || ||   | |    |||||||| ||||| || |||||||||||||||||| | ||||||||||| || ||||||  | | || |||||| |  
gta-ctctcatttctttcaggatactttccatcaatattaataaaa--gtttttagtacatgtttgttt---ttgaagttatccattccattttagGTTATAGACATTCCATCCAATCCAGGACCATATGAAATCCAGTATGATGAAGAATGGCTTGCAATAACACGAAAATTCAACAGTGTTTTCCCTTTAGCAC

upper sequence: Vv18s0001g08180.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA04G06310.1 (Glycine max), 3'ss of exon 4
--gtagcccttgttattttcatttatgttttaagggcttttaatgtagtcattgctggaaattaaatgcctcaattggtggtactgagcgagttttagATTGTTGAAATAGAAACAGTGCCAGGACCTTATGAGATTCAGTATGATGAAGAATGGTTGGCAATAACACGGAAGTTCAACTCTATCTTTCCTTTAACCA
   ||| | | ||| | |   ||   |  ||||   ||| |    |||   ||   |  | |   || |    || | | || ||| ||    |||||||||| ||||| ||| |||   ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| || ||||| ||  
gtataggcatagttctataatttgcagggttaat--cttctgtgatagctgtttgagttagt--gatacaatcatggcttgttctgtgc---ctttagATTGTGGAAATTGAATCAGATGCAGGACCTTATGAGATTCAGTATGATGAAGAATGGTTAGCAATAACACGGAAGTTCAACCCTATATTCCCTTTGACTT

upper sequence: Vv18s0001g08180.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA06G06360.1 (Glycine max), 3'ss of exon 6
gtagcccttgttattttcatttatgttttaagggcttttaatgtagtcattgctggaaattaaatgcctcaattggtggtactgagcgagt-tttagATTGTTGAAATAGAAACAGTGCCAGGACCTTATGAGATTCAGTATGATGAAGAATGGTTGGCAATAACACGGAAGTTCAACTCTATCTTTCCTTTAACCA
       | |  |||    | ||  ||| | ||    |     |  |  ||| | ||  |  | ||  |  | |  ||| |      | |  |||||||||| ||||| ||| |||   |||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||  ||| || ||||| ||  
----gtataggcattgcactctaattttcagggttaatcctcatgatagttgtttgagtt--agtgattacaatcatggcatgttctgtgcctttagATTGTGGAAATTGAATCAGATGCAGGACCTTATGAGATTCAGTGCGATGAAGAATGGTTAGCAATAACACGGAAGTTCAACCATATATTCCCTTTGACTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtagtcattgctggaaattaaatgcctcaattggtggtactgagcgagttttagATTGTTGAAATAGAAACAGTGCCAGGACCTTATGAGATTCAGTATGATGAAGAATGGTTGGCAATAACACGGAAGTTCAACTCTATCTTTCCTTTAACCA
               aaattaaat  TA-rich tract