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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggcacattttagttgggtgaaccttattttttttctatgagtactagataggttttctctcttccaatgtagGTAAAATCTCTGCTGGAAAAATTACCTGCTTCAGACAAGTCTTTTAGTAAACTGCTCGGTGAAGTTCCTCTTTTGCCCGATTCTGCCTTGAAATTGTTAG

Basic information

species Vitis vinifera
transcript Vv18s0001g08140.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g08140.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA04G09480.1 (Glycine max), 3'ss of exon 8
---------------gtaggcacattttagttgggtgaaccttattttttttctatgagtactagataggttttctctcttccaatgtagGTAAAATCTCTGCTGGAAAAATTACCTGCTTCAGACAAGTCTTTTAGTAAACTGCTCGGTGAAGTTCCTCTTTTGCCCGATTCTGCCTTGAAATTGTTAG
               || |     | ||| ||     ||  ||    | ||| | |   ||  || | | | | ||   | |   ||||||  ||  |  || ||||    || || |||||||||||||||||||||| ||| || ||||||||||| |||||||| || ||  |||||||  | ||| 
gtatgctcacaattagttgtttggtcttatttaacaaaaattttcaatgtttttgttt-taaaagttggatatactacttcct--tgtagGCCAAGACGTTGTTGGATTCTTTTCCAGCTTCAGACAAGTCTTTTAGTAGACTTCTTGGTGAAGTTCCACTTTTGCCTGAGTCATCCTTGAAGATTTTAA

upper sequence: Vv18s0001g08140.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA06G09580.1 (Glycine max), 3'ss of exon 7
gtaggcacatt-ttagttgggtgaaccttatttt----ttttctatgagt--actagataggtt---ttctctcttccaatgtagGTAAAATCTCTGCTGGAAAAATTACCTGCTTCAGACAAGTCTTTTAGTAAACTGCTCGGTGAAGTTCCTCTTTTGCCCGATTCTGCCTTGAAATTGTTAG
||| || ||   |||||||  ||   |||||||     |||||||||  |    || | | |||   |   ||  | |  ||||||  ||| || || ||||    || || |||||||||||||||||||||| ||| || |||||||| || |||||||| || ||  |||||||  | ||  
gtatgctcacaattagttgtttgg-tcttatttaagaattttctatgtttttgttataaaagttggatatactacttccttgtagGCCAAAACTTTGTTGGATTCTTTTCCAGCTTCAGACAAGTCTTTTAGTAGACTTCTTGGTGAAGTCCCACTTTTGCCAGAGTCATCCTTGAAGATTTTGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaaccttattttttttctatgagtactagataggttttctctcttccaatgtagGTAAAATCTCTGCTGGAAAAATTACCTGCTTCAGACAAGTCTTTTAGTAAACTGCTCGGTGAAGTTCCTCTTTTGCCCGATTCTGCCTTGAAATTGTTAG
                                   ttttctctcttccaat  CT-rich tract
      ttattttttttctatg  TA-rich tract