1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...actgtactgccatcaggatctttggaattgacctgaaatcttctagtaccatggatttaacttaaaatttcatgcttgtggttcatttggaatctgccagAAGGGATGCAAGAGCAGCTGAGAGAGAACAAGGTGGGCAAAGAAGGCCGCCGCTACAGGGGTTTTCACAGAGACGTCTTCTGTTCACCATTGCAATTACA
species | Vitis vinifera |
transcript | Vv18s0001g07890.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTCCAAGATAATGGTGTTGGTGTCTCAGATCATACCGTCAGTTCTTCAAG AAGGGATGCAAGAGCAGCTGAGAGAGAACAAGGTGGTCAAAGAAGGCCGCCEST: gi|110382356|gb|EC939258.1|EC939258
genomic: GTCCAAGATAATGGTGTTGGTGTCTCAGATCATACCGTCAGTTCTTCAAGgtagatagtg ... aatctgccagAAGGGATGCAAGAGCAGCTGAGAGAGAACAAGGTGGGCAAAGAAGGCCGCC
EST: GTCCAAGATAATGGTGTTGGTGTCTCAGATCATACCGTCAGTTCTTCAAG AAGGGATGCAAGAGCAGCTGAGAGAGAACAAGGTGGGCAAAGAAGGCCGCCEST: gi|110419639|gb|EC985884.1|EC985884
genomic: GTCCAAGATAATGGTGTTGGTGTCTCAGATCATACCGTCAGTTCTTCAAGgtagatagtg ... aatctgccagAAGGGATGCAAGAGCAGCTGAGAGAGAACAAGGTGGGCAAAGAAGGCCGCC
EST: GTCCAAGATAATGGTGTTGGTGTCTCAGATCATACCGTCAGTTCTTCAAG AAGGGATGCAAGAGCAGCTGAGAGAGAACAAGGTGGGCAAAGAAGGCCGCCEST: gi|30127915|gb|CB913254.1|CB913254
genomic: GTCCAAGATAATGGTGTTGGTGTCTCAGATCATACCGTCAGTTCTTCAAGgtagatagtg ... aatctgccagAAGGGATGCAAGAGCAGCTGAGAGAGAACAAGGTGGGCAAAGAAGGCCGCC
EST: GTCCAAGATAATGGTGTTGGTGTCTCAGATCATACCGTCAGTTCTTCAAG AAGGGATGCAAGAGCAGCTGAGAGAGAACAAGGTGGGCAAAGAAGGCCGCCEST: gi|33407908|gb|CF213535.1|CF213535
genomic: GTCCAAGATAATGGTGTTGGTGTCTCAGATCATACCGTCAGTTCTTCAAGgtagatagtg ... aatctgccagAAGGGATGCAAGAGCAGCTGAGAGAGAACAAGGTGGGCAAAGAAGGCCGCC
EST: GTCCAAGATAATGGTGTTGGTGTCTCAGATCATACCGTCAGTTCTTCAAG AAGGGATGCAAGAGCAGCTGAGAGAGAACAAGGTGGGCAAAGAAGGCCGCC
genomic: GTCCAAGATAATGGTGTTGGTGTCTCAGATCATACCGTCAGTTCTTCAAGgtagatagtg ... aatctgccagAAGGGATGCAAGAGCAGCTGAGAGAGAACAAGGTGGGCAAAGAAGGCCGCC
gtaccatggatttaacttaaaatttcatgcttgtggttcatttggaatctgccagAAGGGATGCAAGAGCAGCTGAGAGAGAACAAGGTGGGCAAAGAAGGCCGCCGCTACAGGGGTTTTCACAGAGACGTCTTCTGTTCACCATTGCAATTACA
atttaac putative branch site (score: 3)
atttaacttaaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actgtactgccatcaggatctttggaattgacctgaaatcttctagtaccatggatttaacttaaaatttcatgcttgtggttcatttggaatctgccagAAGGGATGCAAGAGCAGCTGAGAGAGAACAAGGTGGGCAAAGAAGGCCGCCGCTACAGGGGTTTTCACAGAGACGTCTTCTGTTCACCATTGCAATTACA
- - - - gccatca
- - - - - - - - - - - - - - - acctgaa
- - - - - - - - - - - - - - - - - - - -cttctag
- - - - - - - - - - - - - - - - - - - - - - - - ccatgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgct