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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggttcatgatgcaattctatgtgaagttttataacctctgctccacttctcttcattttcttattaatttatcaaatgcctgtgtgcatgggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGAAGGATGGAGGAATGGAGCTTGGGAGACTTTTCATCTTATCAGTAGTAGT

Basic information

species Vitis vinifera
transcript Vv18s0001g05720.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|83277401|gb|DV941409.1|DV941409
EST:     GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG                         AGTTAGGTATGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
EST: gi|110709573|gb|EE085152.1|EE085152
EST:     GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG                         AGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
EST: gi|351056616|gb|FQ442444.1|FQ442444
EST:     GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG                         AGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAAAGGGTGAGCTCGTAGA
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
EST: gi|110397825|gb|EC963748.1|EC963748
EST:     GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG                         AGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
EST: gi|351025290|gb|FQ434303.1|FQ434303
EST:     GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG                         AGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAAA
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
EST: gi|110364443|gb|EC924186.1|EC924186
EST:     GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG                         AGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
EST: gi|32244981|gb|CD710800.1|CD710800
EST:     GTGAGACATCTAAAGCTGATGACCCTCAAGCAGAG                         AGTTAGGTATGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
EST: gi|34363089|gb|CF404674.1|CF404674
EST:     GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG                         AGTTAGGTATGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
EST: gi|30254150|gb|CB971165.1|CB971165
EST:     GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG                         AGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
EST: gi|351012745|gb|FQ430308.1|FQ430308
EST:     GTGAGACATCTAAAGCTGATGAACCTCAAGCAAAA                         AGTTAGGTGTGGGACAAAAGAGGTGATTTCTTT
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATT-CTTT
EST: gi|87586625|gb|DY474825.1|DY474825
EST:     GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG                         AGTTAGGTATGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
EST: gi|110405257|gb|EC970796.1|EC970796
EST:     GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG                         AGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
EST: gi|27755229|gb|CB035984.1|CB035984
EST:     GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG                         AGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
EST: gi|32245214|gb|CD711033.1|CD711033
EST:     GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG                         AGTTAGGTATGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
EST: gi|71890887|gb|DT039942.1|DT039942
EST:     GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG                         AGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
EST: gi|110392064|gb|EC957212.1|EC957212
EST:     GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG                         AGTTAGGTATGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
EST: gi|110395364|gb|EC961026.1|EC961026
EST:     GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG                         AGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
EST: gi|110364219|gb|EC923597.1|EC923597
EST:     GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG                         AGTTAGGTATGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
EST: gi|110424050|gb|EC990403.1|EC990403
EST:     GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG                         AGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
EST: gi|110422906|gb|EC989240.1|EC989240
EST:     GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG                         AGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
EST: gi|110417293|gb|EC983336.1|EC983336
EST:     GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG                         AGTTAGGTATGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
EST: gi|110419923|gb|EC986180.1|EC986180
EST:     GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG                         AGTTAGGTATGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
EST: gi|27580489|gb|CB003184.1|CB003184
EST:     GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG                         AGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
EST: gi|351040928|gb|FQ443704.1|FQ443704
EST:     GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG                         AGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
EST: gi|110370298|gb|EC929339.1|EC929339
EST:     GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG                         AGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
EST: gi|110411588|gb|EC977309.1|EC977309
EST:     GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG                         AGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
EST: gi|18459307|gb|BM437585.1|BM437585
EST:     GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG                         AGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTANA
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
EST: gi|30300606|gb|CB977400.1|CB977400
EST:     GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG                         AGTTAGGTATGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
EST: gi|351026498|gb|FQ428510.1|FQ428510
EST:     GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG                         AGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCG
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCG
EST: gi|34549688|gb|CF517920.1|CF517920
EST:     GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG                         AGTTAGGTATGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCT
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCT
EST: gi|351038901|gb|FQ457576.1|FQ457576
EST:     GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG                         AGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
EST: gi|30253800|gb|CB971085.1|CB971085
EST:     GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG                         AGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
EST: gi|30300673|gb|CB977467.1|CB977467
EST:     GTGAGACATCTAAAGCTGATGACCCTCAAGCAGAG                         AGTTAGGTATGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
EST: gi|352798988|gb|FQ480837.1|FQ480837
EST:     GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG                         AGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
EST: gi|34362955|gb|CF404540.1|CF404540
EST:     GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG                         AGTTAGGTATGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
EST: gi|71873026|gb|DT022081.1|DT022081
EST:     GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG                         AGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
EST: gi|34544771|gb|CF513003.1|CF513003
EST:     GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG                         AGTTAGGTATGGGACAAAAGAGGTGATTCTTTG-GATGGGTGAGCTCGTAG
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGA-GGGTGAGCTCGTAG
EST: gi|110716449|gb|EE091439.1|EE091439
EST:     GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG                         AGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
EST: gi|110368574|gb|EC932559.1|EC932559
EST:     GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG                         AGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
EST: gi|77587121|gb|DV222691.1|DV222691
EST:     GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG                         AGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
EST: gi|351036204|gb|FQ464049.1|FQ464049
EST:     GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG                         AGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
EST: gi|351022476|gb|FQ446998.1|FQ446998
EST:     GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG                         AGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
EST: gi|110401144|gb|EC967739.1|EC967739
EST:     GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG                         AGTTAGGTATGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
EST: gi|351033022|gb|FQ461911.1|FQ461911
EST:     GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG                         AGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
EST: gi|30133595|gb|CB918934.1|CB918934
EST:     GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG                         AGTTAGGTATGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
EST: gi|110715051|gb|EE092660.1|EE092660
EST:     GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG                         AGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
EST: gi|45770683|gb|CN006535.1|CN006535
EST:     GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG                         AGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
EST: gi|110398286|gb|EC964539.1|EC964539
EST:     GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG                         AGTTAGGTATGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
EST: gi|110699231|gb|EE076048.1|EE076048
EST:     GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG                         AGTTAGGTATGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
EST: gi|34319532|gb|CF372286.1|CF372286
EST:     GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAG                         AGTTAGGTATGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA
genomic: GTGAGACATCTAAAGCTGATGAACCTCAAGCAGAGgtaagaaact ... ggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttctcttcattttcttattaatttatcaaatgcctgtgtgcatgggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGAAGGATGGAGGAATGGAGCTTGGGAGACTTTTCATCTTATCAGTAGTAGT
                tattaat  putative branch site (score: 2)
      ttcattttcttattaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ggttcatgatgcaattctatgtgaagttttataacctctgctccacttctcttcattttcttattaatttatcaaatgcctgtgtgcatgggatttgcagAGTTAGGTGTGGGACAAAAGAGGTGATTCTTTGAGAGGGTGAGCTCGTAGAAGGATGGAGGAATGGAGCTTGGGAGACTTTTCATCTTATCAGTAGTAGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT
-gttcatg
- - - - - - - - ctatgtg
- - - - - - - - - - - - - - - - -acctctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgcatg