1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtacataacacaaacagtaagctttctataactgggtaatggaataggtcaggattgaaccttgttttcaactgctattatgttcaaaatagGTACGCCAACAACCCCAGCCTTTATGCAGTTGAGCTGATAAATGAGCCTCTATCACCGGGAGCAACTCTAGAAATGGTTACCAAGTACTACAGGGCCGGT
species | Vitis vinifera |
transcript | Vv18s0001g05030.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GACCAGAACATACAAAAGACCGTGGCCGTTATAGAATTTTTAACTGCCAG GTACGCCAACAACCCCAGCCTTTATGCAGTTGAGCTGATAAATGAGCCTCTEST: gi|37187875|gb|CF607226.1|CF607226
genomic: GACCAGAACATACAAAAGACCGTGGCCGTTATAGAATTCTTAACTGCCAGgtacataaca ... ttcaaaatagGTACGCCAACAACCCCAGCCTTTATGCAGTTGAGCTGATAAATGAGCCTCT
EST: GACCAGAACATACAAAAGACCGTGGCCGTTATAGAATTCTTAACTGCCAG GTACGCCAACAACCCCAGCCTTTATGCAGTTGAGCTGATAAATGAGCCTCTEST: gi|77581990|gb|DV219944.1|DV219944
genomic: GACCAGAACATACAAAAGACCGTGGCCGTTATAGAATTCTTAACTGCCAGgtacataaca ... ttcaaaatagGTACGCCAACAACCCCAGCCTTTATGCAGTTGAGCTGATAAATGAGCCTCT
EST: GACCAGAACATACAAAAGACCGTGGCCGTTATAGAATTCTTAACTGCCAG GTACGCCAACAACCCCAGCCTTTATGCAGTTGAGCTGATAAATGAGCCTCTEST: gi|110699710|gb|EE076947.1|EE076947
genomic: GACCAGAACATACAAAAGACCGTGGCCGTTATAGAATTCTTAACTGCCAGgtacataaca ... ttcaaaatagGTACGCCAACAACCCCAGCCTTTATGCAGTTGAGCTGATAAATGAGCCTCT
EST: GACCAGAACATACAAAAGACCGTGGCCGTTATAGAATTCTTTACTGCTAG GTACGCCAACAACCCCAGCCTTTATG
genomic: GACCAGAACATACAAAAGACCGTGGCCGTTATAGAATTCTTAACTGCCAGgtacataaca ... ttcaaaatagGTACGCCAACAACCCCAGCCTTTATG
aatggaataggtcaggattgaaccttgttttcaactgctattatgttcaaaatagGTACGCCAACAACCCCAGCCTTTATGCAGTTGAGCTGATAAATGAGCCTCTATCACCGGGAGCAACTCTAGAAATGGTTACCAAGTACTACAGGGCCGGT
tattatgttcaaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacataacacaaacagtaagctttctataactgggtaatggaataggtcaggattgaaccttgttttcaactgctattatgttcaaaatagGTACGCCAACAACCCCAGCCTTTATGCAGTTGAGCTGATAAATGAGCCTCTATCACCGGGAGCAACTCTAGAAATGGTTACCAAGTACTACAGGGCCGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA