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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgggccatccatctttatcctatttatttgtaaagtgccaaaattttattcaatctcttagagttttaaaacctgatcctgtttgtttctttgtcttagctctcccgatttcataatttaattgcggaagattaactcaatataacagtgtttcattttaggtttttcatttatcgtgcagGCAATAGCGGAAGGCATGTTGTTGAAACTTCCCTATACAACCATATTTGAGTATCTTCAG

Basic information

species Vitis vinifera
transcript Vv18s0001g04420.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34544647|gb|CF512879.1|CF512879
EST:     GTGAGTCACATTTTGAAGTGGTGAAGAAGGTCATCAGTAATCATCATGCT                         GCAGTAGCGGAAGGCATGTTGTTGAAACTTCCCTATACAACCATATTTGAG
genomic: GTGAGTCACATTTTGAAGTGGTGAAGAAGGCCATCAGTAATCATCATGCTgtatgggcca ... tatcgtgcagGCAATAGCGGAAGGCATGTTGTTGAAACTTCCCTATACAACCATATTTGAG
EST: gi|110726674|gb|EE102660.1|EE102660
EST:     GTGAGTCACATTTTGAAGTGGTGAAGAAGGCCATCAGTAATCATCATGCT                         GCAATAGCGGAAGGCATGTTGTTGAAACTTCCCTATACAACCATATTTGAG
genomic: GTGAGTCACATTTTGAAGTGGTGAAGAAGGCCATCAGTAATCATCATGCTgtatgggcca ... tatcgtgcagGCAATAGCGGAAGGCATGTTGTTGAAACTTCCCTATACAACCATATTTGAG
EST: gi|71859197|gb|DT008252.1|DT008252
EST:     GTGAGTCACATTTTGAAGTGGTGAAGAAGGTCATCAGTAATCATCATGCT                         GCAATAGCGGAAGGCATGTTGTTGAAACTTCCCTATACAACCATATTTGAG
genomic: GTGAGTCACATTTTGAAGTGGTGAAGAAGGCCATCAGTAATCATCATGCTgtatgggcca ... tatcgtgcagGCAATAGCGGAAGGCATGTTGTTGAAACTTCCCTATACAACCATATTTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaagattaactcaatataacagtgtttcattttaggtttttcatttatcgtgcagGCAATAGCGGAAGGCATGTTGTTGAAACTTCCCTATACAACCATATTTGAGTATCTTCAG
                                    tttttcattt  CT-rich tract
     ttaactcaatataa  TA-rich tract