Sequence
atgc intronic sequence ATGC exonic sequencegtaaggaagcataaattgagttgctctatatttatcagaagatttgagacattttatcaagatgttggtttctgtactacatttaccttgtagGAACATGTTGAAGGGTATCATGAATTGTCCGCAAAAACAAAAATATTCTTTTCAACTGCTGTAGCAAAATGGGATGCTGAATTCTATGTCAAAGTGGATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g04150.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os09g27950.1 (Oryza sativa), 3'ss of exon 6
-------------------gtaaggaagcataaattgagttgctctatatttatcaga---agat--------------ttgagacattttatcaagatgttggtttctgtactacatttacct-----tgtagGAACATGTTGAAGGGTATCATGAATTGTCCGCAAAAACAAAAATATTCTTTTCAACTGCTGTAGCAAAATGGGATGCTGAATTCTATGTCAAAGTGGATG
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gtatggtgacatccaccaaaagtagaagcacatcattctttac-ctatttctgttaaaccaaaatctgttttactgtgattggggctgtagtccatactaatgtttattctgctgcaaccacacatgtatgtagGACCATGTTGAAGGGTATCACGAGCTATCTGCAAAGACCAAGATATTCTTTTCCACTGCTGTGGCATTATGGGATGCTGATTTCTATGTCAAGGTGGATG
upper sequence: Vv18s0001g04150.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: EFJ20056 (Selaginella moellendorffii), 3'ss of exon 7
gtaaggaagcataaattgagttgctctatatttatcagaagatttgagacattttatcaagatgttggtttctgtactacatttaccttgtagGAACATGTTGAAGGGTATCATGAATTGTCCGCAAAAACAAAAATATTCTTTTCAACTGCTGTAGCAAAATGGGATGCTGAATTCTATGTCAAAGTGGATG
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-------------------------------------gtaaatttgctcca---tggtgagacgtttacttat-----aatttcgttctgtagGACCATGTTGAAGGCTATCTCGAGTTGTCTGCCAAAACCAAAATCTACTTTTCCACAGCTGTGGCAAAATGGGATGCCGACTTTTACGTCAAAGTAGATG
upper sequence: Vv18s0001g04150.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: EFJ30358 (Selaginella moellendorffii), 3'ss of exon 6
gtaaggaagcataaattgagttgctctatatttatcagaagatttgagacattttatcaagatgttggtttctgtactacatttaccttgtagGAACATGTTGAAGGGTATCATGAATTGTCCGCAAAAACAAAAATATTCTTTTCAACTGCTGTAGCAAAATGGGATGCTGAATTCTATGTCAAAGTGGATG
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-----------gtaatagaaacgctttctatgtcttt-----cctctttcaatgtactgaaacgtagtttctccttgtctgctggcgc--aagGACCATATTGAAGGCTACATGGAGCTGTCGGCAAAAACGAAGATCTACTTTTCTACAGCTGTTGCTAAATGGGATGCGGAATTCTACGTCAAAGTCGACG
upper sequence: Vv18s0001g04150.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: EFJ28470 (Selaginella moellendorffii), 3'ss of exon 6
gtaaggaagcataaattgagttgctctatatttatcagaagatttgagacattttatcaagatgttggtttctgtactacatttaccttgtagGAACATGTTGAAGGGTATCATGAATTGTCCGCAAAAACAAAAATATTCTTTTCAACTGCTGTAGCAAAATGGGATGCTGAATTCTATGTCAAAGTGGATG
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-----------gtaatagaaacgctttctatgtcttt-----cctctttcaatgtactgaaacgtagtttctccttgtctgctggcgc--aagGACCATATTGAAGGCTACATGGAGCTGTCCGCAAAAACGAAGATCTACTTTTCTACAGCTGTTGCTAAATGGGATGCGGAATTCTACGTCAAAGTCGACG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aagatttgagacattttatcaagatgttggtttctgtactacatttaccttgtagGAACATGTTGAAGGGTATCATGAATTGTCCGCAAAAACAAAAATATTCTTTTCAACTGCTGTAGCAAAATGGGATGCTGAATTCTATGTCAAAGTGGATG
tttacctt CT-rich tract
attttatcaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaggaagcataaattgagttgctctatatttatcagaagatttgagacattttatcaagatgttggtttctgtactacatttaccttgtagGAACATGTTGAAGGGTATCATGAATTGTCCGCAAAAACAAAAATATTCTTTTCAACTGCTGTAGCAAAATGGGATGCTGAATTCTATGTCAAAGTGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA