1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttgagccaactcatgcatagctgtaaccagtccatcctaaacagttgatttgtggtttcctggttactcattcaatgctttcttgccgctgatgatgcagGATGCTGTAAAAGACATCGAGTAAACACCGGGCTGTGAATTTGCTTCAAGTAAGCATATGAGACTATGATATGCATAACCAATTGGCAAGCACATTACTA
species | Vitis vinifera |
transcript | Vv18s0001g03830.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GACTATTGGTAACAGCATTGGCTGCAACGTATGTGCCACGGCTTGCTAAG GATGCTGTAAAAGACATCGAGTAACCCCCGGGCTGTGAATTTGCTTCAAGTEST: gi|30251641|gb|CB969374.1|CB969374
genomic: GACTATTGGTAACAGCATTGGCTGCAACGTATGTGACACGGCTTGCTAAGgtaattcttc ... gatgatgcagGATGCTGTAAAAGACATCGAGTAAACACCGGGCTGTGAATTTGCTTCAAGT
EST: GACTATTGGTACCAGCATTGGCTGCAACGTATGTGCCCCGGCTTGCTAAG GATGCTGTAAAAGCCATCGAGTAACCCCCGGGCTGTGAATTTGCTTCAAGT
genomic: GACTATTGGTAACAGCATTGGCTGCAACGTATGTGACACGGCTTGCTAAGgtaattcttc ... gatgatgcagGATGCTGTAAAAGACATCGAGTAAACACCGGGCTGTGAATTTGCTTCAAGT
tgatttgtggtttcctggttactcattcaatgctttcttgccgctgatgatgcagGATGCTGTAAAAGACATCGAGTAAACACCGGGCTGTGAATTTGCTTCAAGTAAGCATATGAGACTATGATATGCATAACCAATTGGCAAGCACATTACTA
cgctgat putative branch site (score: 4)
attcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgagccaactcatgcatagctgtaaccagtccatcctaaacagttgatttgtggtttcctggttactcattcaatgctttcttgccgctgatgatgcagGATGCTGTAAAAGACATCGAGTAAACACCGGGCTGTGAATTTGCTTCAAGTAAGCATATGAGACTATGATATGCATAACCAATTGGCAAGCACATTACTA
- - - caactca
- - - - - - -tgcatag
- - - - - - - - - - - gtaacca
- - - - - - - - - - - - - - - -ccatcct
- - - - - - - - - - - - - - - - - - - aaacagt
- - - - - - - - - - - - - - - - - - - - - - - - -ttgtggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcattc