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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgctttagtggattaacttgtgtcaatttttcatccttctgctgttggctctgctaaatgattccagtgtcatagCTGCTTGCCCAACTCTGTTTTGGTATTTGAGGAAAGGTTAGCAGTGGTCCGTGCTGTGCAACATATTCCCAAAGGTACTGAG

Basic information

species Vitis vinifera
transcript Vv18s0001g03730.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30136335|gb|CB921673.1|CB921673
EST:     AGACCGCTTGGTACTGGACTATATCCTGTCATTTCAATTATTAACCACAG                         CTGCTTGCCCAACTCTGTTTTGGTATTTGAGGAAAGGTTAGCAGTGGTCCG
genomic: AGACCGCTTGGTACTGGACTATATCCTGTCATTTCAATTATTAACCACAGgtaagtgctt ... agtgtcatagCTGCTTGCCCAACTCTGTTTTGGTATTTGAGGAAAGGTTAGCAGTGGTCCG
EST: gi|30126004|gb|CB911343.1|CB911343
EST:     AGACCGCTTGGTACTGGACTATATCCTGTCATTTCAATTATTAACCACAG                         CTGCTTGCCCAACTCTGTTTTGGTATTTGAGGAAAGGTTAGCAGTGGTCCG
genomic: AGACCGCTTGGTACTGGACTATATCCTGTCATTTCAATTATTAACCACAGgtaagtgctt ... agtgtcatagCTGCTTGCCCAACTCTGTTTTGGTATTTGAGGAAAGGTTAGCAGTGGTCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcaatttttcatccttctgctgttggctctgctaaatgattccagtgtcatagCTGCTTGCCCAACTCTGTTTTGGTATTTGAGGAAAGGTTAGCAGTGGTCCGTGCTGTGCAACATATTCCCAAAGGTACTGAG
                               tgctaaa  putative branch site (score: 2)
     atttttcat  TA-rich tract