1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atacagtaaaaagtaggatggtcagaggattcttgaaacatctcatctttaccctgctgtctgagactcaattgctgatcattccttgtccattgtgcagACAAATTATTCATGCTGAAGGCCCCTCAGGTCCTAACAGAGAATATCTTTTCCAACTTGAACAAGCACTCCTTCAAATGG
species | Vitis vinifera |
transcript | Vv18s0001g03150.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAACTTAATCGTAACTACCTTGGCCCTGCATCAGTTGAAGAGATTGCCAA ACAAATTATTCATGCTGAAGGCCCCTCAGGTCCTAACAGAGAATATCTTTTEST: gi|110371933|gb|EC936069.1|EC936069
genomic: AAACTTAATCGTAACTACCTTGGCCCTGCATCAGTTGAAGAGATTGCCAAgtatgtattc ... cattgtgcagACAAATTATTCATGCTGAAGGCCCCTCAGGTCCTAACAGAGAATATCTTTT
EST: AAACTTAATCGTAACTACCTTGGCCCTGCATCAGTTGAAGAGATTGCCAA ACAAATTATTCATGCTGAAGGCCCCTCAGGTCCTAACAGAGAATATCTTTTEST: gi|71873170|gb|DT022225.1|DT022225
genomic: AAACTTAATCGTAACTACCTTGGCCCTGCATCAGTTGAAGAGATTGCCAAgtatgtattc ... cattgtgcagACAAATTATTCATGCTGAAGGCCCCTCAGGTCCTAACAGAGAATATCTTTT
EST: AAACTTAATCGTAACTACCTTGGCCCTGCATCAGTTGAAGAGATTGCCAA ACAAATTATTCATGCTGAAGGCCCCTCAGGTCCTAACAGAGAATATCTTTTEST: gi|110709129|gb|EE084317.1|EE084317
genomic: AAACTTAATCGTAACTACCTTGGCCCTGCATCAGTTGAAGAGATTGCCAAgtatgtattc ... cattgtgcagACAAATTATTCATGCTGAAGGCCCCTCAGGTCCTAACAGAGAATATCTTTT
EST: AAACTTAATCGTAACTACCTTGGCCCTGCATCAGTTGAAGAGATTGCCAA ACAAATTATTCATGCTGAAGGCCCCTCAGGTCCTAACAGAGAATATCTTTTEST: gi|110382676|gb|EC946993.1|EC946993
genomic: AAACTTAATCGTAACTACCTTGGCCCTGCATCAGTTGAAGAGATTGCCAAgtatgtattc ... cattgtgcagACAAATTATTCATGCTGAAGGCCCCTCAGGTCCTAACAGAGAATATCTTTT
EST: AAACTTAATCGTAACTACCTTGGCCCTGCATCAGTTGAAGAGATTGCCAA ACAAATTATTCATGCTGAAGGCCCCTCAGGTCCTAACAGAGAATATCTTTTEST: gi|46910084|gb|CN545459.1|CN545459
genomic: AAACTTAATCGTAACTACCTTGGCCCTGCATCAGTTGAAGAGATTGCCAAgtatgtattc ... cattgtgcagACAAATTATTCATGCTGAAGGCCCCTCAGGTCCTAACAGAGAATATCTTTT
EST: AAACTTAATCGTAACTACCTTGGCCCTGCATCAGTTGAAGAGATTGCCAA ACAAATTATTCATGCTGAAGGCCCCTCGGGTCCTAACAGAGAATATCTTTTEST: gi|27580878|gb|CB003573.1|CB003573
genomic: AAACTTAATCGTAACTACCTTGGCCCTGCATCAGTTGAAGAGATTGCCAAgtatgtattc ... cattgtgcagACAAATTATTCATGCTGAAGGCCCCTCAGGTCCTAACAGAGAATATCTTTT
EST: AAACTTAATCGTAACTACCTTGGCCCTGCATCAGTTGAAGAGATTGCCAA ACAAATTATTCATGCTGAAGGCCCCTCAGGTCCTAACAGAGAATATCTTTTEST: gi|83275290|gb|DV938441.1|DV938441
genomic: AAACTTAATCGTAACTACCTTGGCCCTGCATCAGTTGAAGAGATTGCCAAgtatgtattc ... cattgtgcagACAAATTATTCATGCTGAAGGCCCCTCAGGTCCTAACAGAGAATATCTTTT
EST: AAACTTAATCGTAACTACCTTGGCCCTGCATCAGTTGAAGAGATTGCCAA ACAAATTATTCATGCTGAAGGCCCCTCAGGTCCTAACAGAGAATATCTTTTEST: gi|30321569|gb|CD004831.1|CD004831
genomic: AAACTTAATCGTAACTACCTTGGCCCTGCATCAGTTGAAGAGATTGCCAAgtatgtattc ... cattgtgcagACAAATTATTCATGCTGAAGGCCCCTCAGGTCCTAACAGAGAATATCTTTT
EST: AAACTTAATCGTAACTACCTTGGCCCTGCATCAGTTGAAGAGATTGCCAA ACAAATTATTCATGCTGAAGGCCCCTCAGGTCCTAACAGAGAATATCTTTTEST: gi|27580470|gb|CB003165.1|CB003165
genomic: AAACTTAATCGTAACTACCTTGGCCCTGCATCAGTTGAAGAGATTGCCAAgtatgtattc ... cattgtgcagACAAATTATTCATGCTGAAGGCCCCTCAGGTCCTAACAGAGAATATCTTTT
EST: AAACTTAATCGTAACTACCTTGGCCCTGCATCAGTTGAAGAGATTGCCAA ACAAATTATTCATGCTGAAGGCCCCTCAGGTCCTAACAGAGAATATCTTTTEST: gi|27581639|gb|CB004334.1|CB004334
genomic: AAACTTAATCGTAACTACCTTGGCCCTGCATCAGTTGAAGAGATTGCCAAgtatgtattc ... cattgtgcagACAAATTATTCATGCTGAAGGCCCCTCAGGTCCTAACAGAGAATATCTTTT
EST: AAACTTAATCGTAACTACCTTGGCCCTGCATCAGTTGAAGAGATTGCCAA ACAAATTATTCATGCTGAAGGCCCCTCAGGTCCTAACAGAGAATATCTTTT
genomic: AAACTTAATCGTAACTACCTTGGCCCTGCATCAGTTGAAGAGATTGCCAAgtatgtattc ... cattgtgcagACAAATTATTCATGCTGAAGGCCCCTCAGGTCCTAACAGAGAATATCTTTT
tctttaccctgctgtctgagactcaattgctgatcattccttgtccattgtgcagACAAATTATTCATGCTGAAGGCCCCTCAGGTCCTAACAGAGAATATCTTTTCCAACTTGAACAAGCACTCCTTCAAATGG
tgctgat putative branch site (score: 3)
ttccttgtcc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atacagtaaaaagtaggatggtcagaggattcttgaaacatctcatctttaccctgctgtctgagactcaattgctgatcattccttgtccattgtgcagACAAATTATTCATGCTGAAGGCCCCTCAGGTCCTAACAGAGAATATCTTTTCCAACTTGAACAAGCACTCCTTCAAATGG
- - -gtaaaaa
- - - - - - - - - - - - - - - - -tgaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcattcc