Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tagttcacattaataagatagcagatgggtatattattttcaacatttttttttttttatggtcaattggttccattttaatctgcttctattgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACCTTTCTCCACAGAGCTGATAGTTGATCCCCTTCTATATCTGCATTTGGTT

Basic information

species Vitis vinifera
transcript Vv18s0001g02260.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g02260.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA14G24270.2 (Glycine max), 3'ss of exon 5
---tagttcacattaa--taagatagcagatgggtatattattttcaacatttttttttttttatggtcaattggttccattttaatctgcttctattgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACCTTTCTCCACAGAGCTGATAGTTGATCCCCTTCTATATCTGCATTTGGTT---
   |  ||       |  || || |    |     || ||||    ||   |  | | || || |      ||  |   || || |||||  |      || |||||| |||| |||||||||||| ||||| || || |||||||||||||||  | |   |    | |||  | ||          |  | ||| || |  |    
ggcttattggtgaggaattaggacatttaactttgattttatgcctaatcataatatattattgtaagggcttattggtatgttgatctgtctt-----ctgcagCACGCCAAATGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTGAATTATAAGCC---ACCTGGGATTTCTGTTTAGCTTGGAGCTGAATGTCATGACA

upper sequence: Vv18s0001g02260.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA13G10130.1 (Glycine max), 3'ss of exon 5
tagttcacattaataagatagcagatgggtatattattttcaacatttttttttttttatggtcaattggttccattttaat-ctgcttctattgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACCTTT--CTCCACAGAGCTGATAGTTGATCCCCTTCTATATCTGCATTTGGTT
|  |||    |   ||| ||| | ||     ||| | | |   | | ||  | || |  |        ||    |||   ||  || ||    | || |||||| ||||| ||||||||||| ||||| || || ||||||||||||| || | |    |  | ||| |    ||| |        |  |   ||||      
tttttcttccttgaaag-taggacatttaactatgactctatgcctattcatattatagtatctgtaagggcttattggtatgttgatttgtcttctgcagCACGCCAACCGAAGTGAAGGAAAGGATTTTGAAGGGAAGGATGGATTAACTTGTAAGCCACCTGAGTTTTCTGTTTAGTTTGGAGTTGAATGGCATGACA--

upper sequence: Vv18s0001g02260.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT1G21720.1 (Arabidopsis thaliana), 3'ss of exon 6
tagttcacattaataagatagcagatgggtatattattttcaacattttttttttttta---tggtcaattggttccattttaatctgcttctattgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACCTTTCTCCACAGAGCTGATAGTTGATCCCCTTCTATATCTGCATTTGGTT---
             |||| |  ||  |   | | || ||||| |||  ||| || |   |   | ||   |       | ||  ||     | | ||| ||||| |||||||| ||  | |||||||||||| |||| ||||||||||||||| ||   ||  |    |   | |||  | ||  | || ||| |  |||   |   
------------gtaagttctcatttct-tctcttcttttccacacatttgttatccaaaattagttcttaaaacaaacttccatggtgatgtgttg-tacagAACACCAACAGAGATTAAGGAGAGGATCCTAAAGGGAAGGATGGATTGATCTGCTTCTTCTATTCAAGTTGTT--TTCCGCTGTA-ATCCGGTTTTAAGTAGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351025252|gb|FQ434265.1|FQ434265
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAAGATGGATTGACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|351043059|gb|FQ443901.1|FQ443901
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|110358622|gb|EC922965.1|EC922965
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|351036035|gb|FQ463880.1|FQ463880
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|351042763|gb|FQ431241.1|FQ431241
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|33406690|gb|CF212317.1|CF212317
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAGAGGAAGGATGGATTGACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|351046593|gb|FQ453209.1|FQ453209
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|33406790|gb|CF212417.1|CF212417
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAGAGGAAGGATGGATTGACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|110399653|gb|EC966170.1|EC966170
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|351015363|gb|FQ446242.1|FQ446242
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|349832596|gb|FQ421954.1|FQ421954
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|351045652|gb|FQ440837.1|FQ440837
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|349813662|gb|FQ413896.1|FQ413896
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|71889280|gb|DT038335.1|DT038335
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|71882433|gb|DT031488.1|DT031488
EST:     CAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGA
genomic: CAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATG-TCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGA
EST: gi|351048930|gb|FQ449773.1|FQ449773
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|110402513|gb|EC960313.1|EC960313
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|26257297|gb|CA808360.1|CA808360
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|351054655|gb|FQ456852.1|FQ456852
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|26258189|gb|CA809252.1|CA809252
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|351025704|gb|FQ426718.1|FQ426718
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|351018809|gb|FQ425711.1|FQ425711
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|22011604|gb|BQ796638.1|BQ796638
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|110414417|gb|EC980248.1|EC980248
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTAACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|351018791|gb|FQ425693.1|FQ425693
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|349809085|gb|FQ398085.1|FQ398085
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|110419042|gb|EC985234.1|EC985234
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|349829265|gb|FQ419797.1|FQ419797
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|349829602|gb|FQ421120.1|FQ421120
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|351037207|gb|FQ457040.1|FQ457040
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAAGATGGATTGACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|110689722|gb|EE066205.1|EE066205
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|349829652|gb|FQ421170.1|FQ421170
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGTATCTTAAAAGGAAGGATGGATTGACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|349808570|gb|FQ405714.1|FQ405714
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGA                         CACACCAACTGAGGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|110717244|gb|EE092941.1|EE092941
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTAACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|110394987|gb|EC960457.1|EC960457
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|110722163|gb|EE098155.1|EE098155
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTAACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|71890265|gb|DT039320.1|DT039320
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|110387657|gb|EC952341.1|EC952341
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGATATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|110701820|gb|EE079824.1|EE079824
EST:     AGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTAACC
genomic: AGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|351045223|gb|FQ451671.1|FQ451671
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|349832955|gb|FQ423077.1|FQ423077
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|351018701|gb|FQ425603.1|FQ425603
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGTATCTTAAAAGGAAGGATGGATTGACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|110423662|gb|EC990010.1|EC990010
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAA-GGAAGGATGGATTAACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|110700596|gb|EE077387.1|EE077387
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTAACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|110372541|gb|EC936718.1|EC936718
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|110362397|gb|EC925927.1|EC925927
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|30299742|gb|CB976536.1|CB976536
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|349813934|gb|FQ414168.1|FQ414168
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|110423854|gb|EC990205.1|EC990205
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|351029247|gb|FQ435447.1|FQ435447
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|110391604|gb|EC956591.1|EC956591
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|110715271|gb|EE093128.1|EE093128
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTAACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|71859023|gb|DT008078.1|DT008078
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTG
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTG
EST: gi|351031280|gb|FQ445305.1|FQ445305
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|110381521|gb|EC934688.1|EC934688
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|32457736|gb|CD798910.1|CD798910
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|349822039|gb|FQ408368.1|FQ408368
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
EST: gi|161720329|gb|FC071182.1|FC071182
EST:     TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT                         CACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC
genomic: TCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGTgtaagcttct ... attgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttttttttttatggtcaattggttccattttaatctgcttctattgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACCTTTCTCCACAGAGCTGATAGTTGATCCCCTTCTATATCTGCATTTGGTT
                              ttttaat  putative branch site (score: 3)
                                        cttctatt  putative PPT
     ttttttttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tagttcacattaataagatagcagatgggtatattattttcaacatttttttttttttatggtcaattggttccattttaatctgcttctattgctacagCACACCAACTGAAGTGAAGGAGAGGATCTTAAAAGGAAGGATGGATTGACCTTTCTCCACAGAGCTGATAGTTGATCCCCTTCTATATCTGCATTTGGTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT
- - - - - -aataaga
- - - - - - - - - - -cagatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgcttc