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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgtggttgagttttttgttatatgttattcagattattatttctttctgtaagCTGCAAAACCTTAACCGGATTTACACGTATGCATATTTCAAAAGGCTAGACTACTTTTCCACCGAAT

Basic information

species Vitis vinifera
transcript Vv18s0001g00440.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g00440.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os01g41565.1 (Oryza sativa), 3'ss of exon 6
-------gttgtggttgagttttttgttatatgttat--tcagattattatttctttctgtaagCTGCAA------AACCTTAACCGGATTTACACGTATGCATATTTCAAAAGGCTAGACTACTTTTCCACCGAAT
        |  |  ||  |   | |   |||| || |  |  |||  |    ||| | | | |  || |       | |||| |||  ||  ||||||||||||||||||||| ||| |||||||| ||||| ||||
gttatatatccttattatgcaatatcccatatattctcatgtgatcttatgctctatttatcaattgtatgttattatccttgaccctatg-acacgtatgcatatttcaaaaagCTGGACTACTTCTCCACAGAAT

upper sequence: Vv18s0001g00440.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os02g52470.2 (Oryza sativa), 3'ss of exon 7
--------gttgtg----gttgagttttttgttatatgttattcagattattatttctttctgtaagCTGCAAAACCTTAACCGGATTTACACGTATGCATATTTCAAAAGGCTAGACTACTTTTCCACCGAAT
          | ||     |    | |  ||| ||||  |  ||   | || | ||     | || | |   |  |||| |||  ||  ||||||||||||||||||||| ||| |||||||| ||||| ||||
atatccttactatgcaatatcccatataatgtgatattatgctctattcatcaattgcacttttatgttattat-ccttgaccttatg-acacGTATGCATATTTCAAAAAGCTGGACTACTTCTCCACAGAAT

upper sequence: Vv18s0001g00440.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G402242_T02 (Zea mays), 3'ss of exon 6
--------gttgtggttgagttttttgttatatgttattcagattattatttctttctgtaagCTGCAAAACCTTAACCGGATTTACACGTATGCATATTTCAAAAGGCTAGACTACTTTTCCACCGAAT
          | ||    |  || |  ||  || || ||   ||  | | ||| ||   ||   |  ||| ||||||| | ||  ||||||||||||| ||||||| ||| || ||||||||||| ||||
atatcctgtctatgaaatatcttatattttcatttttttactatgttgacttcatttaatatattttaaatccttaactgcatg-acacGTATGCATACTTCAAAAAGCTGGATTACTTTTCCACAGAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgtggttgagttttttgttatatgttattcagattattatttctttctgtaagCTGCAAAACCTTAACCGGATTTACACGTATGCATATTTCAAAAGGCTAGACTACTTTTCCACCGAAT
                                   ttattatttctttct  CT-rich tract
            ttttttgttatatgtt  TA-rich tract