Sequence
atgc intronic sequence ATGC exonic sequence...tcacaatttttctgtgtgagattctacactgcttcaatacgggttctgtaagcttgctttgttcaccttttggtaattaagtgtttctctgtttggttagGAGGGTCTTAGTGATGGAATATATTGATGGAATTCCTATCCTGAACCTCGGTGATGAAATAGCAAAAAGGGGCATTAATCCGGGTGGTAAGCTCGCAGCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g10260.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA17G13650.1 (Glycine max), 3'ss of exon 6
---tcacaatttttctgtgtgagattctacactgcttcaatacgggttctgtaagcttgctttgttcaccttttggtaattaagtgtttctctgtttggttagGAGGGTCTTAGTGATGGAATATATTGATGGAATTCCTATCCTGAACCTCGGTGATGAAATAGCAAAAAGGGGCATTAATCCGGGTGGTAAGCTCGCAGCA
| ||||||| || | ||| | | | || ||| || || ||| | ||| ||||| | ||| |||| | | || |||||| |||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||| ||||| ||| || | ||| ||
ttttttttttttttcttggttaaatttttactcacat--attttagttgtg-aatattgtgataagtttttttaagtaataatgtgcttcttggatgttacagAAGGGTCCTAGTTATGGAATATATTGATGGGATTCCTATAATGAACCTCGGTGATGAAATAGCAAAGAGGGGCATAAATCCTCATGGCAAAGTTGCAACA
upper sequence: Vv17s0000g10260.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA05G02990.1 (Glycine max), 3'ss of exon 6
---tcacaatttttctgtgtgagattctacactgcttcaatacgggttctgtaagcttgctttgttcaccttttggtaattaagtgtttctctgtttggttagGAGGGTCTTAGTGATGGAATATATTGATGGAATTCCTATCCTGAACCTCGGTGATGAAATAGCAAAAAGGGGCATTAATCCGGGTGGTAAGCTCGCAGCA
|| | | |||| || ||||| | | | || ||| || || |||| | ||| ||||| | ||| |||| | ||| || |||||| |||| ||||||||||||||||| |||||||| ||| ||| ||||||||||||||||| |||||||| ||||| ||| ||| | ||||||
ttagcaaatatattcttggttagatttttactcacat--attttagttgtg-aatcttgtgataagtttttttaagtaatgatgtgcttcttggattgtacagAAGGGTCCTAGTTATGGAATATATTGATGGGATTCCTATAATGAGCCTTGGTGATGAAATAGCAAAGAGGGGCATAAATCCTCATGGCAAGGTTGCAGCA
upper sequence: Vv17s0000g10260.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT5G50330.2 (Arabidopsis thaliana), 3'ss of exon 5
-------------------------------------------------------------------------------tcacaatttttctgtgtgagattctacact---gcttcaatacgggttctgtaagcttgctttgttcaccttttggtaattaagtgtttctctgtttggttagGAGGGTCTTAGTGATGGAATATATTGATGGAATTCCTATCCTGAACCTCGGTGATGAAATAGCAAAAAGGGGCATTAATCCGGGTGGTAAGCTCGCAGCA
| | || || | | || || || |||| || | |||||| | || | | | | | ||| | |||||||| || ||||||||||| ||| |||||||||| ||||||| | | |||||||| || || ||||| || || ||||| ||||||| | ||||
gtaagtgttcttacttttgcatatcatatacctgattggttaatgtgataatgtttaaggccttctctagatggagcctctgctgtcatttaatggcatactcacatcttaaactacaatttttttttatcatttttgcttcgggtgatacttaccatatgaacaatcatg-atttcctcagGAGGGTTTTGGTGATGGAATACATTAATGGAATTCCAATCCTGAGCATTGGTGATGAGATGGCTAAAAGAGGGATAAATCCTCATGGTAAGATTGCAGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctgtaagcttgctttgttcaccttttggtaattaagtgtttctctgtttggttagGAGGGTCTTAGTGATGGAATATATTGATGGAATTCCTATCCTGAACCTCGGTGATGAAATAGCAAAAAGGGGCATTAATCCGGGTGGTAAGCTCGCAGCA
tttctctgttt CT-rich tract
taattaagt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcacaatttttctgtgtgagattctacactgcttcaatacgggttctgtaagcttgctttgttcaccttttggtaattaagtgtttctctgtttggttagGAGGGTCTTAGTGATGGAATATATTGATGGAATTCCTATCCTGAACCTCGGTGATGAAATAGCAAAAAGGGGCATTAATCCGGGTGGTAAGCTCGCAGCA
- - - - - - tgtgtga
- - - - - - - - - - - - - - ctgcttc