Sequence
atgc intronic sequence ATGC exonic sequencegtaagcattttttttttaaaaacaactaattctttgtcatctgtaatgtccatctaatttttatccaccttttccttgacacttgcagGATGAAAATAAGAGCAAGAAGGGTCTTGCTGAGATTTATGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g08620.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os11g04200.1 (Oryza sativa), 3'ss of exon 6
gtaagcattttttttttaaaaacaac-taattctttgtcatctgtaatgtc----catctaatttttatcc-acc-ttttccttgacactt--gcagGATGAAAATAAGAGCAAGAAGGGTCTTGCTGAGATTTATGAG
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gtatacttttaatcttgtccaataacataactcattgatgataacaataactaatcatgtatttgttgtcttaccgttatcaatattatttcaacagGATGAAAGTAAGAGCAAGAAGGGTCTTGCTGAACTATATGAG
upper sequence: Vv17s0000g08620.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os12g04010.1 (Oryza sativa), 3'ss of exon 6
gtaagcatt---ttttttttaaaaaca--actaattctttgtcatctgtaatgtccatctaatttttatcc--accttttccttgacactt--gcagGATGAAAATAAGAGCAAGAAGGGTCTTGCTGAGATTTATGAG
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gtatacttttagtcttgtccaagaacataactcattgatgataacaataactaatcatgtaattgttgtcttgccgttatcaatattatttcaacagGACGAAAGTAAGAGCAAGAAGGGTCTTGCTGAACTATATGAG
upper sequence: Vv17s0000g08620.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G005308_T01 (Zea mays), 3'ss of exon 8
gtaagcattttttttttaaaaacaactaattctttgtcatc-tgtaatgtccatctaatttttatccaccttttccttgacacttg--cagGATGAAAATAAGAGCAAGAAGGGTCTTGCTGAGATTTATGAG
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----------gtatgacaactgaaactcctccatggcagccataagatgactgtgctattggtatcttatattattgtgattgttcatcagGATGAAACTAAGAGCAAGAAGGGTCTTGCTGAACTGTATGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgtcatctgtaatgtccatctaatttttatccaccttttccttgacacttgcagGATGAAAATAAGAGCAAGAAGGGTCTTGCTGAGATTTATGAG
atctaatttttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagcattttttttttaaaaacaactaattctttgtcatctgtaatgtccatctaatttttatccaccttttccttgacacttgcagGATGAAAATAAGAGCAAGAAGGGTCTTGCTGAGATTTATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG