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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtccaatgtctcttctctccgaacattgattatatatagatgttttatcatttatgcatgtatatgttggacctctgtttcttcacccactaaatactcttcatagtattttagGTGACAGAAGACCTCAATTATGTTACTATCCTACAAAAGAAATTCACTCATCTCCTTAGTATCCCCGGTTTCCTCCTACCTCATCCAGCATCATGGTCAT

Basic information

species Vitis vinifera
transcript Vv17s0000g07950.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30329114|gb|CD012376.1|CD012376
EST:     CTTTGATTGCAGTGAAGGAAGGCGTTCTTCAATTGGGATCTGTTAAAAAG                         GTGACAGAAGACCTCAATTATGTTACTATCCTACAAAAGAAATTCACTCAT
genomic: CTTTGATTGCAGTGAAGGAAGGCGTTCTTCAATTGGGATCTGTTAAAAAGgtccaatgtc ... agtattttagGTGACAGAAGACCTCAATTATGTTACTATCCTACAAAAGAAATTCACTCAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatatgttggacctctgtttcttcacccactaaatactcttcatagtattttagGTGACAGAAGACCTCAATTATGTTACTATCCTACAAAAGAAATTCACTCATCTCCTTAGTATCCCCGGTTTCCTCCTACCTCATCCAGCATCATGGTCAT
                            cactaaa  putative branch site (score: 2)
                                        ttcatagtatttta  TA-rich tract