Sequence
atgc intronic sequence ATGC exonic sequence...ttctttcattattccttcttcacttttatttttaatcatgaaaggtaattattaaggtttatcctttatattatgctctcacttcttatattcttgacagAATGATATCTATATATGGCTCACAGCCACATTTTTTCTATGGTTTCTTTTGGCCATCTACTTCGATAATATAATCCCAAATTCATCGGGTGTGAGGAAAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g05850.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA04G34140.2 (Glycine max), 3'ss of exon 6
-------------------------------------------------------------------------ttctttcattattccttcttcacttttatttttaatc--atgaaaggtaattattaaggtttatcctttatattatgct--ctcacttcttatattc------ttgacagAATGATATCTATATATGGCTCACAGCCACATTTTTTCTATGGTTTCTTTTGGCCATCTACTTCGATAATATAATCCCAAATTCATCGGGTGTGAGGAAAT
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gtatgcaatgatttgacctctaaatccctactccataaaccacttcttttttagaagccttttggttgcttttcccttttactttttgttccatagttctaaatttgctttgattcctcccttctgttcagccttagttgtgttactgcagttactcagtgttttttttcttttcattgacagGATGACATTTATAAATGGCTTGCAGCTACATTCTTTCTCTGGTTTGTTCTGGCCATTTACTTTGACAATATAATCCCAAATGCATCGGGTGTGAGGAAAT
upper sequence: Vv17s0000g05850.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA06G20360.2 (Glycine max), 3'ss of exon 6
-----------------------------------------------------------------------------ttctttcattattccttcttcacttttatttttaatcatgaaaggtaatta--ttaaggtttatcctttatattatgctc----tcacttcttatattcttgacagAATGATATCTATATATGGCTCACAGCCACATTTTTTCTATGGTTTCTTTTGGCCATCTACTTCGATAATATAATCCCAAATTCATCGGGTGTGAGGAAAT
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gtatgcaatcatttgacctctaaatccctacttcatacaccacttcattttaagaagccttttggttgcttttaccttttactttctgttccttagttatatttgctttgattcctcccttcccttcagccttagttgtgttactgcaacagtactcagtattttgtttcttttcattgacagGATGACATTTATAAATGGCTTGCGGCTACTTTCTTTCTCTGGTTTGTTCTGGCCATTTACTTTGACAATATAATCCCAAATGCATCAGGTGTGAGGAAATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|46917624|gb|CN546953.1|CN546953EST: GTAAACGAGCAGACTGTGCACCAAATGATTTGGATTGTGTCATTACAATT AATGATATCTATATATGGCTCACAGCCACATTTTTTCTATGGTTTCTTTTG
genomic: GTAAACGAGCAGACTGTGCACCAAATGATTTGGATTGTGTCATTACAATTgtatgtttat ... ttcttgacagAATGATATCTATATATGGCTCACAGCCACATTTTTTCTATGGTTTCTTTTG
EST:
gi|161709915|gb|FC059755.1|FC059755EST: GTAAACGAGCAGACTGTGCACCAAATGATTTGGATTGTGTCATTACAATT AATGATATCTATATATGGCTCACAGCCACATTTTTTCTATGGTTTCTTTTG
genomic: GTAAACGAGCAGACTGTGCACCAAATGATTTGGATTGTGTCATTACAATTgtatgtttat ... ttcttgacagAATGATATCTATATATGGCTCACAGCCACATTTTTTCTATGGTTTCTTTTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taattattaaggtttatcctttatattatgctctcacttcttatattcttgacagAATGATATCTATATATGGCTCACAGCCACATTTTTTCTATGGTTTCTTTTGGCCATCTACTTCGATAATATAATCCCAAATTCATCGGGTGTGAGGAAAT
ctctcac putative branch site (score: 3)
cttcttatattctt CT-rich tract
tttatcctttatatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttctttcattattccttcttcacttttatttttaatcatgaaaggtaattattaaggtttatcctttatattatgctctcacttcttatattcttgacagAATGATATCTATATATGGCTCACAGCCACATTTTTTCTATGGTTTCTTTTGGCCATCTACTTCGATAATATAATCCCAAATTCATCGGGTGTGAGGAAAT
- - - - - - tccttct
- - - - - - - - - - - - - - - - - - catgaaa