Sequence
atgc intronic sequence ATGC exonic sequence...aagctccttttgctttagcactcagtttgtgcttctctgtatggcttcttgtttcatatgatccaatcactaataaaaacaaccaagtttgatttggcagACCAGATGAAGCAGAACTCTTTGCCAAGTCTGCCCAGAATGCATATAAACAATTTCGTGATAAGGCGGCTTTTTCAAGATCAATGGCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g04690.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA06G22870.1 (Glycine max), 3'ss of exon 11
aagctccttttgctt-tagcactcagtttgtgcttctctgtatggcttcttgtttcatatgatccaatcactaataaaaacaaccaagttt---gatttgg--cagACCAGATGAAGCAGAACTCTTTGCCAAGTCTGCCCAGAATGCATATAAACAATTTCGTGATAAGGCGGCTTTTTCAAGATCAATGGCT
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------cttttattgatggcctttacatggttgttatttttctattgtatcagaagagaaaagacggacaaatataacctttttcgattttcttgttttggtacagACCAGATGAAGCAGAGCTATTTGCCAAATCTGCTCAGCATGCTTATAAACAATTTCGAGACAAGGCAGCTTCATCCAGATCAATGACT
upper sequence: Vv17s0000g04690.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA04G31180.1 (Glycine max), 3'ss of exon 10
-aagctccttttgctttagcactcagtttgtgcttctctgtatggcttcttgtttcatatgatccaatcactaataaaaacaaccaagtttgatttgg--cagACCAGATGAAGCAGAACTCTTTGCCAAGTCTGCCCAGAATGCATATAAACAATTTCGTGATAAGGCGGCTTTTTCAAGATCAATGGCT
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tacagggttgttatttttctattatatcagagaa-cactacatg-cttcacttccgagacagacaaatataaacttttttcgatttt-cttgttttggtacagACCAGATGAAGCAGAGCTATTTGCCAAATCTGCTCAGCATGCTTATAAACAATTTCGAGACAAGGCAGCTTCATCCAGATCAATGACT
upper sequence: Vv17s0000g04690.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA17G09020.1 (Glycine max), 3'ss of exon 11
aagctccttttgctttagcactcagtttgtgcttctctgtatggcttcttgtttcatatgatccaatcactaataaaaacaaccaagtttgatttggcagACCAGATGAAGCAGAACTCTTTGCCAAGTCTGCCCAGAATGCATATAAACAATTTCGTGATAAGGCGGCTTTTTCAAGATCAATGGCT
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gtactcataat-catcctctctctctctctctctctctctctctctctctctctc-tctctctctctctctctctctctctctctctctctcttagAGAGACGAGATGAAGCAGAGCTATTTTCCAAGTCTGCGCAGCATGCTTATAAACAATTTCGAGATAAGGCAGCTTTATCCAGATCTATGACT
upper sequence: Vv17s0000g04690.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA17G09020.2 (Glycine max), 3'ss of exon 3
aagctccttttgctttagcactcagtttgtgcttctctgtatggct-tcttgtttcatatgatccaatcactaataaaaacaaccaagtttgatttggcagACCAGATGAAGCAGAACTCTTTGCCAAGTCTGCCCAGAATGCATATAAACAATTTCGTGATAAGGCGGCTTTTTCAAGATCAATGGCT
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-tggtactcataatcatcctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctcttagagagACGAGATGAAGCAGAGCTATTTTCCAAGTCTGCGCAGCATGCTTATAAACAATTTCGAGATAAGGCAGCTTTATCCAGATCTATGACT
upper sequence: Vv17s0000g04690.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA05G07540.1 (Glycine max), 3'ss of exon 12
aagctccttttgctttagcactcagtttgtgcttctctgtatggcttcttgtttcatatgatc-caatcactaataaaaacaaccaagtttgatttg--gcagACCAGATGAAGCAGAACTCTTTGCCAAGTCTGCCCAGAATGCATATAAACAATTTCGTGATAAGGCGGCTTTTTCAAGATCAATGGCT
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------gtcttccttttgctgtca-tttatgcactaatcttttactt-ttgattgatttgagggttcgtactcataatcatcctctctctctctctgctactgactagATGAAGCAGAGCTATTTTCCAAGTCTGCGCAGCATGCTTATAAACAATTTCAAGATAAGGCAGCTTTGTCCAAATCTATGACT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcttgtttcatatgatccaatcactaataaaaacaaccaagtttgatttggcagACCAGATGAAGCAGAACTCTTTGCCAAGTCTGCCCAGAATGCATATAAACAATTTCGTGATAAGGCGGCTTTTTCAAGATCAATGGCT
aatcactaataaaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aagctccttttgctttagcactcagtttgtgcttctctgtatggcttcttgtttcatatgatccaatcactaataaaaacaaccaagtttgatttggcagACCAGATGAAGCAGAACTCTTTGCCAAGTCTGCCCAGAATGCATATAAACAATTTCGTGATAAGGCGGCTTTTTCAAGATCAATGGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - cttttgc
- - - - - - - - -gcactca
- - - - - - - - - - - - -tttgtgc
- - - - - - - - - - - - - - - - - - -tgtatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaacca