Sequence
atgc intronic sequence ATGC exonic sequence...cggttttcaaaattaaataattgcatttcctctggaaactatcagtgttacttgtgcaaagataagcacttactaaattgttgttgtgcttgatatgaagGTGCAAGGAAAAGACCGTTTGTATGTTAAAAATGTAGCAGAGCAACTGGGTTTGGATGGTTCATATGTTCCTCGCACATATATAGAACACATTCAGCTGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g04650.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G147430_T01 (Zea mays), 3'ss of exon 7
------------------------------------------------------------------cggttttca----aaattaaataattgcatttcctctggaaactatcagtgttacttgtgcaaagataagcacttactaa-attgttgttgtgcttgat-atgaagGTGCAAGGAAAAGACCGTTTGTATGTTAAAAATGTAGCAGAGCAACTGGGTTTGGATGGTTCATATGTTCCTCGCACATATATAGAACACATTCAGCTGG-----------------------
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caacttaacagacaatatatacaagtgagcataatctttgttgtttggttgatgtttctctcaatgccatttttgtctcaggttcttgagttctatttatttcagtattatctttttttaatctcttactgtttaagatgtgcaaatgttatgaccatgcttctttatttaggtgcaaggaagagatcggctttatgtTAAATCTGTAGCGGATCAGTTAGGTTTGGATGGTTCTTACATACCACGCACATATATTGAACAAATTCAGCTGGAGAAATTGATTAATGATGTTATG
upper sequence: Vv17s0000g04650.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G147430_T02 (Zea mays), 3'ss of exon 7
------------------------------------------cggttttca----aaattaaataattgcatttcctctggaaactatcagtgttacttgtgcaaagataagcacttactaa-attgttgttgtgcttgat-atgaagGTGCAAGGAAAAGACCGTTTGTATGTTAAAAATGTAGCAGAGCAACTGGGTTTGGATGGTTCATATGTTCCTCGCACATATATAGAACACATTCAGCTGG
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gtgagcataatctttgttgtttggttgatgtttctctcaatgccatttttgtctcaggttcttgagttctatttatttcagtattatctttttttaatctcttactgtttaagatgtgcaaatgttatgaccatgcttctttatttagGTGCAAGGAAGAGATCGGCTTTATGTTAAATCTGTAGCGGATCAGTTAGGTTTGGATGGTTCTTACATACCACGCACATATATTGAACAAATTCAGCTGG
upper sequence: Vv17s0000g04650.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA17G09080.1 (Glycine max), 3'ss of exon 7
cggttttcaaaattaaataattgcatttcctctggaaactatcag-tgttacttgtg-caaagataagcacttactaaattgttgttgtgcttgatatgaagGTGCAAGGAAAAGACCGTTTGTATGTTAAAAATGTAGCAGAGCAACTGGGTTTGGATGGTTCATATGTTCCTCGCACATATATAGAACACATTCAGCTGG
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--atacaacatcttatataagttgactttatttaggaaatatcaactataatgtgtttcttttgttgtcagtaactaaatacttgttcatgttgttttgaagGTTCAAGGGAAAGACAGAAACTATTGTAAATTTGTAGCAGAGAAACTGGGGTTGGATGGTTCCTATGTTCCTCGCACTTACATTGAACAAATCCAGCTTG
upper sequence: Vv17s0000g04650.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA05G07610.1 (Glycine max), 3'ss of exon 8
-cggttttcaaaatt--aaataattgcatttcctctggaaactatcagtgttacttgtgcaaagataagcacttactaaattgttgttgtgcttgatatgaagGTGCAAGGAAAAGACCGTTTGTATGTTAAAAATGTAGCAGAGCAACTGGGTTTGGATGGTTCATATGTTCCTCGCACATATATAGAACACATTCAGCTGG
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ttgttccatggagctcgggacaaatgcccatacctattacatgtttgtatttgtttcttttattgtcagta---accaaattcttgttcatgttgtttttaagGTGCAAGGGAAAGACAGAAACTATTGCAAATTTTTTGCAGAGAAACTGGGGTTGGATGGTTCCTATGTTCCTCGCACTTACATTGAACAAATTCAGCTAG
upper sequence: Vv17s0000g04650.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT1G73980.1 (Arabidopsis thaliana), 3'ss of exon 7
cggttttcaaaattaaataattgcatttcctctggaaactat-cagtgttacttgtgcaaagataagcacttactaa--attgttgttgtgcttgatat-gaagGTGCAAGGAAAAGACCGTTTGTATGTTAAAAATGTAGCAGAGCAACTGGGTTTGGATGGTTCATATGTTCCTCGCACATATATAGAACACATTCAGCTGG
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------gtaagatctgcttctcttatgtctctcaaaacgtatatactgtctttagagtggtattttgacattaatgatcaagtttgtccaactctattttgaagGTACAAGGTAAAGACCGTACCTTTGTCAAAAATGTGGCAGACCAACTTGGACTGGAAGGTTCATATGTTCCACATACATATATTGAACAGATACAGCTGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71865288|gb|DT014343.1|DT014343EST: GAACAACTTAATCGTCGGTATGTTCAG GTGCAAGGAAAAGACCGTTTGTATGTTAAAAATGTAGCAGAGCAACTGGGT
genomic: GAACAACTTAATCGTCGGTATGTTCAGgtaatggtac ... tgatatgaagGTGCAAGGAAAAGACCGTTTGTATGTTAAAAATGTAGCAGAGCAACTGGGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgttacttgtgcaaagataagcacttactaaattgttgttgtgcttgatatgaagGTGCAAGGAAAAGACCGTTTGTATGTTAAAAATGTAGCAGAGCAACTGGGTTTGGATGGTTCATATGTTCCTCGCACATATATAGAACACATTCAGCTGG
ttactaaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cggttttcaaaattaaataattgcatttcctctggaaactatcagtgttacttgtgcaaagataagcacttactaaattgttgttgtgcttgatatgaagGTGCAAGGAAAAGACCGTTTGTATGTTAAAAATGTAGCAGAGCAACTGGGTTTGGATGGTTCATATGTTCCTCGCACATATATAGAACACATTCAGCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - -aaattaa
- - - - - - - - - - - gcatttc
- - - - - - - - - - - - - - - - - gaaacta
- - - - - - - - - - - - - - - - - - - - - - - - - cttgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgtg