Sequence
atgc intronic sequence ATGC exonic sequence...tgatgttttattactaatatcagctgtcttagaaatttattatcattttctccttgcttttctggtaataacactgatgggtttatttatgttttagcagACAATAGATACGAGGATTAAACTTGCTTATGCCCTTGCAAGGCAATGGTTTGGAGTATTTATCAGTCCTGAGGCACCAAATGATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g04200.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G343442_T01 (Zea mays), 3'ss of exon 7
--tgatgttttattactaatatcagctgtcttagaaatttattatcattttctccttgcttttctggtaataacactgatgggtttatttatgttttag--cagACAATAGATACGAGGATTAAACTTGCTTATGCCCTTGCAAGGCAATGGTTTGGAGTATTTATCAGTCCTGAGGCACCAAATGATG
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attagtggctc-ttggtaatgctttgtacacctgcattacattatagtcaagtattatgtttcatacc--ttgcagtc-tgcactaacttgtaaaatagttcagATAATTGGCACAAGAACGAAACTGGCTTATGCCCTTGCAAAGCAATGGTTTGGAATATACACAAGTGCAGAGGAGTCCAGTGACG
upper sequence: Vv17s0000g04200.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA05G07920.1 (Glycine max), 3'ss of exon 6
-----------------------------------tgatgttttattactaatatc-----agctgtcttagaaatttattatcattttc-tccttgcttttctggtaataacac----------tgatgggtttatttatgttttagcagACAATAGATACGAGGATTAAACTTGCTTATGCCCTTGCAAGGCAATGGTTTGGAGTATTTATCAGTCCTGAGGCACCAAATGATG
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gtcagttcattacttgaattcttttatttgattttctatattttctaattaatctctttctgaatgaatgaaaaactgtttttcttgctcatgagggtttttctgcttataatatgccagcttaatgatcagttttagtctttgttgacagACTATTGATACAAGGGTTAAACTTGCATATGCTCTCGCAAGACAGTGGTTTGGTGTGTATATCACTCCTGAGGCACCAAATGATG
upper sequence: Vv17s0000g04200.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA17G13080.1 (Glycine max), 3'ss of exon 6
----------------------------------tg-atgttttattactaatatc-----agctgtcttagaaatttattatcattttctccttgcttttctggtaataacac-------tgatgggtttattta---tgttttagcagACAATAGATACGAGGATTAAACTTGCTTATGCCCTTGCAAGGCAATGGTTTGGAGTATTTATCAGTCCTGAGGCACCAAATGATG
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gtcagttcactacttgaattcttttatttgattttgtattttttctaattaatctctttctgaatgaataaaaaactgtttttcttgcacacaaggctttttttcttatgatatgcctgcttaatgacctgtcttagtctttgttgacagACTATTGATACAAGGGTAAAACTTGCATATGCTCTCGCAAGACAGTGGTTTGGTGTGTACATCACTCCTGAGGCACCAAATGATG
upper sequence: Vv17s0000g04200.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT1G73960.1 (Arabidopsis thaliana), 3'ss of exon 6
--tgatgttttattactaatatcagctgtcttagaaatttattatcattttctccttgcttttctggtaataacactgatgggtttatttatgttttagcagACAATAGATACGAGGATTAAACTTGCTTATGCCCTTGCAAGGCAATGGTTTGGAGTATTTATCAGTCCTGAGGCACCAAATGATG
| | || || || | | || | | | | |||| || | | | ||| || || || ||||| | | | | || ||||||||||||||| | ||||||||||||| ||| | |||| || ||||||||||| | ||| | |||||| ||||||||||||
ttcactatgtttataggaagttttctttctttggtggtgtttcgtcatctttttagttcctttatg-caaaaat-ctgatagagcttcaattatctttgcagACAATAGATACACGCATTAAACTTGCTTCTGCGTTAGCAAAACAGTGGTTTGGAGTTTATATTACTCCTGAATCACCAAATGATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttctccttgcttttctggtaataacactgatgggtttatttatgttttagcagACAATAGATACGAGGATTAAACTTGCTTATGCCCTTGCAAGGCAATGGTTTGGAGTATTTATCAGTCCTGAGGCACCAAATGATG
tttatttatgtttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgatgttttattactaatatcagctgtcttagaaatttattatcattttctccttgcttttctggtaataacactgatgggtttatttatgttttagcagACAATAGATACGAGGATTAAACTTGCTTATGCCCTTGCAAGGCAATGGTTTGGAGTATTTATCAGTCCTGAGGCACCAAATGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - cagctgt
- - - - - - - - - - - - - - - agaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatggg