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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatgtctttattcacagttcactcactttaatttctacacatttactctgtttatggcatatctaaactcagttttaaataccacaggcgtctaacttggtttttgattttttgtttttttgtttttttttagGAAACCTTGTTTGATGAATTTGTGCTTGCTCATATCTTTGGTTGGTGGGGAAAAGCCATAATGATCCGCAATCAACCTCTTTTATGGGTTTTGTCATTTG

Basic information

species Vitis vinifera
transcript Vv17s0000g03010.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g03010.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G095757_T02 (Zea mays), 3'ss of exon 6
gtatgatgtctttattcacagttcactcactttaatttctacacatttactctgtttatggcatatctaa--actcagttttaaataccacaggcgtctaacttggtttttgattttttgtttttttgtttttttttagGAAACCTTGTTTGATGAATTTGTGCTTGCTCATATCTTTGGTTGGTGGGGAAAAGCCATAATGATCCGCAATCAACCTCTTTTATGGGTTTTGTCATTTG
|||||||| ||| ||||||     ||| |||||  ||| |   || || |  |  | ||   |  ||| |  |  |||| || | ||    |  ||  | |    |||  ||||||        | |  |||||| ||||| | | | ||||||||||||||  | ||||||||| |||| |||||||| || || |||||||| || || ||||| ||||| ||||| |||||| |||
gtatgatgacttcattcacca---acttactttcctttttgttcaatttcgtttctcata-tacttctgactaagcagtcttgactattcaatacgcttca---agttactgatttgaa-----tatagttttttctagGAGATCATTTTTGATGAATTTGTTATAGCTCATATCCTTGGATGGTGGGGTAAGGCTATAATGATACGAAACCAACCACTTTTGTGGGTCTTGTCAATTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataccacaggcgtctaacttggtttttgattttttgtttttttgtttttttttagGAAACCTTGTTTGATGAATTTGTGCTTGCTCATATCTTTGGTTGGTGGGGAAAAGCCATAATGATCCGCAATCAACCTCTTTTATGGGTTTTGTCATTTG
                      tttttgattttttgtt  CT-rich tract
                  ttggtttttgattttt  TA-rich tract