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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggttctgtttttagtgtttttttacctctctaatttgatgttatgtgtttgattcaatggaggagaagatgatgattgactgactgataaaagtatgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAGCCTCTTACAAGATCAAAGGCTGACAACCTAGCAGCTCAAAGATCCAGAG

Basic information

species Vitis vinifera
transcript Vv17s0000g02680.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g02680.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os07g46280.3 (Oryza sativa), 3'ss of exon 6
--------------gtatggttctgtttttag-tgtttttttacctctctaatttgatgttatgtgtttgattcaatggaggagaagatgatgattgactgactgataaaagtatgtttctcagAAAG----AACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAGCCTCTTACAAGATCAAAGGCTGACAACCTAGCAGCTCAAAGATCCAGAG
                |  |||| | |    | ||  |||  ||    | |     ||  | |  |||   ||   |      | |  |||  ||  | |     ||  |  | |     |   | ||    | ||||||||||||||||||||||||||||||||||| |||||||| ||  | |        || ||||| |     ||||| || ||  | ||||
gtaaaatagcagaatgacagttcagctcaaggctggatttacactatgcaatgcaaattatctcagttacttttgctatccctgtatctgagaatgtagtctgcaatgcatttcttccaattgaacagCTTTATCAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTCTGGTATGAACCATTCAGTGACAGCAATGCTGATAGGGCTGCAGCACAGAGGGCAAGAG

upper sequence: Vv17s0000g02680.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os01g32364.1 (Oryza sativa), 3'ss of exon 6
gtatggttctgtttttagtgtttttttacctctctaatttgatgttatgtgtttgattcaatggaggagaagatgatgattgactgactgataaaagtatgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAGCCTCTTACAAGATCAAAGGCTGACAACCTAGCAGCTCAAAGATCCAGAG
 ||| |  |  ||| |||||   |    ||  |        |    |  |  | |  | ||     || |   |  | |   | ||  | | |||       || |||| |   ||||||||||| ||||||||||||  |||||||||| ||||||||   |||||| |  |||| ||| ||| |    || ||||||||||| ||||
atatagcgc-atttatagtgacatggatccagttagcccataaaacaaatagtagcatgaaattcagaaatagtcctaa--aaatgcttaacaaa------cttttcagCATATACAAAAGGGGAAGATTGGAATTCTTCTGGATTTTGTCTGGTATGAAGGTCTTACCAATTCAACGGCAGACCAAGCTGCGGCTCAAAGATCAAGAG

upper sequence: Vv17s0000g02680.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA09G30910.1 (Glycine max), 3'ss of exon 6
-gtatggttctgtttttagtgtttttttacctctctaatttgatgttatgtgtttgattcaatggaggagaagatgatgattgactgactgataaaagtatgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAGCCTCTTACAAGATCAAAGGCTGACAACCTAGCAGCTCAAAGATCCAGAG
   ||  |||     | |   | |  ||  |||| |  ||| |||  |     || |   | |       || ||| |   | |     | || || ||   | | | || || | |||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||| ||||||
ctaatatttcgaggatcaaattatggtttactcttttgtttaatgg-actcacttaaactact-------aaaatgtt--cttatgaggttatgaatgtgcttcttttagGAAAAGCAAAAGGGAAGGATTGGGATCCTCTTGGATTTTGTTTGGTATGAGCCTCTTACAAGATCAAAGGCTGACAATTTTGCAGCTCAAAGAGCCAGAG

upper sequence: Vv17s0000g02680.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA07G11310.1 (Glycine max), 3'ss of exon 6
gtatggttctgtttttagtgtttttttacctctctaatttgatgttatgtgtttgattcaatggaggagaagatgatgattgactgactgataaaagtatgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAGCCTCTTACAAGATCAAAGGCTGACAACCTAGCAGCTCAAAGATCCAGAG
               || | ||| | || ||      |||| ||| |||   || | | ||      | || ||  | ||    |||   ||    |  ||||| | || || | |||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||| ||||||
--------------gtaatatttgtatatctagtccttttg-tgtaatggactt-acttaagatgctaaaatattcttatgtggtgatgaatgt--gcttgttttttagGAAAAGCAAAAGGGAAGGATTGGGATCCTCTTGGATTTTGTTTGGTATGAGCCTCTTACAAGATCAAAGGCCGACAATTTAGCAGCTCAAAGAGCCAGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351038587|gb|FQ464453.1|FQ464453
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|349807989|gb|FQ402380.1|FQ402380
EST:     CATGCAGCTGCCGTTCAGAGATACAGGGAGAAACATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: CATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|349819506|gb|FQ413390.1|FQ413390
EST:     CATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: CATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|351042229|gb|FQ442696.1|FQ442696
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAN                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|351055479|gb|FQ442275.1|FQ442275
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|351015813|gb|FQ431768.1|FQ431768
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|349820199|gb|FQ406875.1|FQ406875
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|349828779|gb|FQ419112.1|FQ419112
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|351033074|gb|FQ446427.1|FQ446427
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|352794098|gb|FQ479340.1|FQ479340
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|351026942|gb|FQ436595.1|FQ436595
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGGTATGA
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGG-TATGA
EST: gi|351045661|gb|FQ440846.1|FQ440846
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|351041781|gb|FQ455991.1|FQ455991
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|351022837|gb|FQ428746.1|FQ428746
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|352790099|gb|FQ479709.1|FQ479709
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|349833003|gb|FQ416381.1|FQ416381
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACGGGGAGAAATATCAC                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|349824288|gb|FQ417699.1|FQ417699
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|351023766|gb|FQ448317.1|FQ448317
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|351042412|gb|FQ442879.1|FQ442879
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|349828121|gb|FQ415449.1|FQ415449
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|349821869|gb|FQ413040.1|FQ413040
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|349807852|gb|FQ402243.1|FQ402243
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|351038429|gb|FQ464295.1|FQ464295
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|349830823|gb|FQ417121.1|FQ417121
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|349824165|gb|FQ417552.1|FQ417552
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|351042983|gb|FQ434424.1|FQ434424
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|351049247|gb|FQ428990.1|FQ428990
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAC                         AAACAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|351042839|gb|FQ451133.1|FQ451133
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|351021685|gb|FQ437070.1|FQ437070
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|351019070|gb|FQ426569.1|FQ426569
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|30132936|gb|CB918275.1|CB918275
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|110686135|gb|EE063475.1|EE063475
EST:     GATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGGAGAA-TATCAA                         AAAGAACAAAAGGGGAGGATTGGGATTCTCTTGGA
genomic: GATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGG-AGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGA
EST: gi|351038347|gb|FQ461039.1|FQ461039
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|351042390|gb|FQ442857.1|FQ442857
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCGA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|351016597|gb|FQ424024.1|FQ424024
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|351019040|gb|FQ426539.1|FQ426539
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|349820204|gb|FQ406880.1|FQ406880
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|351016480|gb|FQ423907.1|FQ423907
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|351024209|gb|FQ423632.1|FQ423632
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|349818794|gb|FQ409328.1|FQ409328
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAATGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|351032953|gb|FQ461842.1|FQ461842
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|349811511|gb|FQ409507.1|FQ409507
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|30256158|gb|CB972001.1|CB972001
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|349829906|gb|FQ422219.1|FQ422219
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|349829069|gb|FQ419601.1|FQ419601
EST:     CATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: CATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|351012024|gb|FQ429830.1|FQ429830
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|349828601|gb|FQ418336.1|FQ418336
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|351054304|gb|FQ450387.1|FQ450387
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|351031036|gb|FQ444863.1|FQ444863
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|351055113|gb|FQ440452.1|FQ440452
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|110694692|gb|EE072021.1|EE072021
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|352798358|gb|FQ480383.1|FQ480383
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|351055976|gb|FQ453437.1|FQ453437
EST:     CATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: CATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|110685849|gb|EE062930.1|EE062930
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|352794496|gb|FQ481729.1|FQ481729
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
EST: gi|349828289|gb|FQ416242.1|FQ416242
EST:     TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAA                         AAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG
genomic: TGATTTTGTCCCATGCAGCTGCCGTTCAGAGATACAGGGAGAAATATCAAgtatggttct ... tgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattcaatggaggagaagatgatgattgactgactgataaaagtatgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAGCCTCTTACAAGATCAAAGGCTGACAACCTAGCAGCTCAAAGATCCAGAG
                                             tgtttctc  CT-rich tract
                                    ataaaagtatgttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatggttctgtttttagtgtttttttacctctctaatttgatgttatgtgtttgattcaatggaggagaagatgatgattgactgactgataaaagtatgtttctcagAAAGAACAAAAGGGGAGGATTGGAATTCTCTTGGATTTTGTTTGGTATGAGCCTCTTACAAGATCAAAGGCTGACAACCTAGCAGCTCAAAGATCCAGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA