Sequence
atgc intronic sequence ATGC exonic sequencegtacgcaaatttattcttgacaactgttctccattcttcgtgtctgttttagtataatattgaagctgatgtctgataggagttgtgatcagctattttaaaactattggtatttcatgcacttgtctccatggttgcagCTTTAACAGATTTGATTTTCCACCAATATTTCATCATGATGAGGATACTAATCCAGATGAATTACGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g01850.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA06G18080.1 (Glycine max), 3'ss of exon 6
---------------------------------------------------gtacgcaaatttattcttgacaactgttctccatt----cttcgtgtctgt---tttagtataatattgaagctgatgtctgataggagttgtgatcagctattttaaaactattggtatttcatgcactt-gtctccatggttgcagCTTTAACAGATTTGATTTTCCACCAATATTTCATCATGATGAGGATACTAATCCAGATGAATTACGG
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gtatgattatttatgtgtttttgacattcaactttctgtaattcattcttagtacatagtttaatctttattaatttgatcacattgaagcagtgaacttatgtttttaattcactcttagtacata-gtttaatctttatta-gtttgatcacattgaagcagtaaacttaatatttttttcattttcatgctt-cagCTTTAACAAATTTGACTTCCCACCAATATTTCATCGTGATGAAGATACTAATGAAGATGAAATACGG
upper sequence: Vv17s0000g01850.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA04G36900.1 (Glycine max), 3'ss of exon 7
gtacgcaaatttattcttgacaactgttctccattcttcgtgtctgttttagtataatattgaagctgatgtctgataggagttgtgatcagctattttaaaactattggtatttcatgcacttgtctccatggttgcagCTTTAACAGATTTGATTTTCCACCAATATTTCATCATGATGAGGATACTAATCCAGATGAATTACGG
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--------------------------------atttttaat-tcattcttagt-tagtacatagtttaatctttatta--atttgatcacattgaagccgtaagt-ttaatattttattt--tcattttcatgctt-cagCTTTAACAAATTTGACTTCGCACCAATATTTCATCGTGATGAAGATACTAATGAAGATGAAATACGG
upper sequence: Vv17s0000g01850.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT3G48500.2 (Arabidopsis thaliana), 3'ss of exon 5
gtacgcaaatttattcttgacaactgttctccattcttcgtgtctgttttagtataatattgaagctgatgtctgataggagttgtgatcagctattttaaaactattggtatttcatgcacttgtctccatggttgcagCTTTAACAGATTTGATTTTCCACCAATATTTCATCATGATGAGGATACTAATCCAGATGAATTACGG
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--------gtatgtaattcaca--cgtatttaattctctttacatatcc-agtaaaaattggcattttggttctgtcctcaatggtc-ttggttatggtatatgtgttgactgtttttacattcct-------gctccagATTTAATAAATTTGACTTCCCACCAATATTCCATCGTGATGGGGATACTAATCCAGATGAGATACGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgatcagctattttaaaactattggtatttcatgcacttgtctccatggttgcagCTTTAACAGATTTGATTTTCCACCAATATTTCATCATGATGAGGATACTAATCCAGATGAATTACGG
tctccat CT-rich tract
tattttaaaactattg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacgcaaatttattcttgacaactgttctccattcttcgtgtctgttttagtataatattgaagctgatgtctgataggagttgtgatcagctattttaaaactattggtatttcatgcacttgtctccatggttgcagCTTTAACAGATTTGATTTTCCACCAATATTTCATCATGATGAGGATACTAATCCAGATGAATTACGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG