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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttgagcatgttcaaaaaatcttgctgcacacatgatattgttttacagttatcatattcagtgttttgtgttagcattatcattgacaatgctttggatgctatttgggtttgtgtttattgaaatggttctgcatgtcaaggtgatgctttgttgtttgatgttctttttaactcggtgttatgttagGACAATCCTTCGGAGAAAGATATCAACCAGGGTACCCTTGTGGTATTTAACCTTGATTCATCTGTTTCCAATGATGATCTTCGTCAAATTTTTGGCATTT

Basic information

species Vitis vinifera
transcript Vv17s0000g00240.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g00240.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os02g31290.1 (Oryza sativa), 3'ss of exon 6
gtatgttgagcatgttcaaaaaatcttgctgcacacatgatattgttttacagttatcatattcagtgttttgtgttagcattatcattgacaatgctttggatgctatttgggtttgtgttta--ttgaaatggttctgcatgtcaaggtgatgctttgttgtttgatgttctttttaactcggtgttatgttagGACAATCCTTCGGAGAAAGATATCAACCAGGGTACCCTTGTGGTATTTAACCTTGATTCATCTGTTTCCAATGATGATCTTCGTCAAATTTTTGGCATTT
                                          |     |  | | |||| |||  |    ||   | |  ||  | ||      ||| ||   || |   ||   ||||| |||   ||  ||  ||||  || |  |  | |   |  |    ||  || | || ||  | |           ||||||||||||||||||||||||| |||||||| ||  ||||  | |||||| ||||   |||| |  | ||||||||||| | | | || |||||    |
-----------------------------------------gtaaccatcaaatcatca-att--gccacttaactgaaaatgcttatc-----tgcattttctgttgcctgttcttgtgcttagaatgttattattctagatattcac-taaaattgagcacatt--tgcttttctttcccca---------cagGACAATCCTTCGGAGAAAGATATTAACCAGGGAACTATTGTACTTTTTAACGTTGACCTATCTTTAACAAATGATGATCTACATAAGATCTTTGGTGACT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtcaaggtgatgctttgttgtttgatgttctttttaactcggtgttatgttagGACAATCCTTCGGAGAAAGATATCAACCAGGGTACCCTTGTGGTATTTAACCTTGATTCATCTGTTTCCAATGATGATCTTCGTCAAATTTTTGGCATTT
                                 ttttaac  putative branch site (score: 2)
                             ttctttttaa  TA-rich tract