1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...acaatttatgctgatcaagttaatcttggttaacaggtagattatctccagtggttgggtaggggtactgacttaaatcattgttttatttcacccttagGGTTTTGACAGCTGGGCGTCAGCTTGCAAGAAGTTTAGAGTCTCAGTCACTGAATGATCTGGGATTTTCCAAAAGATATGTGAGGTGCTTGCAG
species | Vitis vinifera |
transcript | Vv16s0100g00500.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGTGGATCTGATGGGATTTCTCAGCAGGACTTACAAACAAATAGCAACAT GGTTTTGACAGCTGGGCGTCAGCTTGCAAGAAGTTTAGAGTCTCAGTCGCTEST: gi|161705769|gb|FC056640.1|FC056640
genomic: AGTGGATCTGATGGGATTTCTCAGCAGGACTTACAAACAAATAGCAACATgtgagttaaa ... tcacccttagGGTTTTGACAGCTGGGCGTCAGCTTGCAAGAAGTTTAGAGTCTCAGTCACT
EST: AGTGGATCTGATGGGATTTCTCAGCAGGACTTACAAACAAATAGCAACAT GGTTTTGACAGCTGGGCGTCAGCTTGCAAGAAGTTTAGAGTCTCAGTCGCTEST: gi|161720327|gb|FC071180.1|FC071180
genomic: AGTGGATCTGATGGGATTTCTCAGCAGGACTTACAAACAAATAGCAACATgtgagttaaa ... tcacccttagGGTTTTGACAGCTGGGCGTCAGCTTGCAAGAAGTTTAGAGTCTCAGTCACT
EST: AGTGGATCTGATGGGATTTCTCAGCAGGACTTACAAACAAATAGCAACAT GGTTTTGACAGCTGGGCGTCAGCTTGCAAGAAGTTTAGAGTCTCAGTCGCTEST: gi|161708994|gb|FC058786.1|FC058786
genomic: AGTGGATCTGATGGGATTTCTCAGCAGGACTTACAAACAAATAGCAACATgtgagttaaa ... tcacccttagGGTTTTGACAGCTGGGCGTCAGCTTGCAAGAAGTTTAGAGTCTCAGTCACT
EST: AGTGGATCTGATGGGATTTCTCAGCAGGACTTACAAACAAATAGCAACTT GGTTTTGACAGCTGGGCGTTC-GCTTGCAAGAAGTTTAGAGTCTCAGTCGC
genomic: AGTGGATCTGATGGGATTTCTCAGCAGGACTTACAAACAAATAGCAACATgtgagttaaa ... tcacccttagGGTTTTGACAGCTGGGCGT-CAGCTTGCAAGAAGTTTAGAGTCTCAGTCAC
ctccagtggttgggtaggggtactgacttaaatcattgttttatttcacccttagGGTTTTGACAGCTGGGCGTCAGCTTGCAAGAAGTTTAGAGTCTCAGTCACTGAATGATCTGGGATTTTCCAAAAGATATGTGAGGTGCTTGCAG
tactgac putative branch site (score: 1)
ttttatttcaccctt putative PPT
acttaaatcattgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaatttatgctgatcaagttaatcttggttaacaggtagattatctccagtggttgggtaggggtactgacttaaatcattgttttatttcacccttagGGTTTTGACAGCTGGGCGTCAGCTTGCAAGAAGTTTAGAGTCTCAGTCACTGAATGATCTGGGATTTTCCAAAAGATATGTGAGGTGCTTGCAG
- - - tatgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - ggttggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tactgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatcat