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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatacatccaaaattagcttaatgtgaggttcctaacagtaatctatcgccatggaatgaacaatctaaatcaagatttagagagagagataccttcgtaggagttattgaagatactgattattttttgtgaacagGACTTTCCATCACCAGATGCAATCCAAATTGCTAACAACCTCTCAAACCTGGGCCAAATATACAACAGAGAAGACATTTCAACAGATATTTTG

Basic information

species Vitis vinifera
transcript Vv16s0100g00480.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0100g00480.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G044247_T01 (Zea mays), 3'ss of exon 6
gtaagatacatccaaaattagcttaatgtgaggttcctaacagtaatctatcgccatggaatgaacaatc-taaatcaagatttagagagagagataccttcgtaggagttattgaagatactgattattttt--tgtgaacagGACTTTCCATCACCAGATGCAATCCAAATTGCTAACAACCTCTCAAACCTGGGCCAAATATACAACAGAGAAGACATTTCAACAGATATTTTG
                                             | |   |     |  ||||||  |  | || | | |  ||       ||  |||| |    || | ||  |    ||| |||| ||||    |  ||||||  ||||||| | |||||||||||| ||||| |||||| | ||| |||| || || ||||||||||| ||||| ||     |    | |   
----------------------------------------gtacgaccgtacaaagagagatgaactgttgtcaacctatagctatgatatcaggaacctgca---gactgat--acagcactaattaattttgacattgacagGATCTTCCATCGCAAGATGCAATCCAGATTGCAAACAACATATCAGACCTTGGTCAGATATACAACAGGGAAGATATGGATTCCAGCAGTCCA

upper sequence: Vv16s0100g00480.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA20G29480.2 (Glycine max), 3'ss of exon 5
gtaagatacatccaaaattagcttaatgtgaggttcctaacagtaatctatcgccatggaatgaacaatctaaatcaagatttagaga-----gagagataccttcgtaggagttattgaagatactga-ttattttttgtgaacagGACTTTCCATCACCAGATGCAATCCAAATTGCTAACAACCTCTCAAACCTGGGCCAAATATACAACAGAGAAGACATTTCAACAGATATTTTG
                                               || |   ||   ||| |||  |  |||   | ||| ||| |     | || ||| ||           | | || ||||||| ||    || ||||||||||  |||||||| ||||||||| ||||||||| ||||| ||||| |||||||||||||| || ||||||||||||  |||||||||| | |||
-----------------------------------------------cttttatcacataattaaccgttaaaagggacattaagataacatggtgaaatatctaaaagatgtgaaatcaaaatactgaattggccttggtgaacagGATCTTCCATCAGCAGATGCAAACCAAATTGCCAACAATCTCTCCAACCTGGGCCAAATCTATAACAGAGAAGACCCTTCAACAGATGTCTTG

upper sequence: Vv16s0100g00480.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA10G38370.1 (Glycine max), 3'ss of exon 6
gtaagatacatccaaaattagcttaatgtgaggttcctaacagtaatctatcgccatggaatgaacaatctaaatcaagatttagagagagagataccttcgtaggagttat----tgaagatactga-ttattttttgtgaacagGACTTTCCATCACCAGATGCAATCCAAATTGCTAACAACCTCTCAAACCTGGGCCAAATATACAACAGAGAAGACATTTCAACAGATATTTTG
                                               || |   ||   ||| |||| |  |||   | ||| ||| |    | |       ||  || | |    | || ||||||| ||    || ||||||||||  |||||||| ||||||||| ||||||||| ||||| ||||| ||| |||| ||||| || ||||||||||||  |||||||||| | |||
----------------------------------------------ccttttatcacataattaacagttaaaagggatattaagataacatggtgaaaatctaaaagatgtgaagtcaatatactgaattggccttggtgaacagGATCTTCCATCAGCAGATGCAAACCAAATTGCCAACAATCTCTCCAACTTGGGTCAAATCTATAACAGAGAAGACCCTTCAACAGATGTCTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagagagataccttcgtaggagttattgaagatactgattattttttgtgaacagGACTTTCCATCACCAGATGCAATCCAAATTGCTAACAACCTCTCAAACCTGGGCCAAATATACAACAGAGAAGACATTTCAACAGATATTTTG
                                tactgat  putative branch site (score: 2)
                                      ttatttttt  CT-rich tract
                               atactgattatttttt  TA-rich tract