1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtttggtttaactatgtacaagtatctgtccttcatttcaggcctaggcatcaggggtgttgaaccaggagttatcgcatacacctaaggccttaaaaatctgtcatttgccaagggattccatttctttccatttaacaatacaactggttttgacctttgaagGATCTAGACGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTTGATGTGAGCTTAGACTGTGTTGGCTTCAACAAAACCATGTCAACAGCTT
species | Vitis vinifera |
transcript | Vv16s0100g00290.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAAAAGATCTTGGCGCAGACGATATTATCCGGGTTTCAACGAATATTCAG GATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTTEST: gi|110401034|gb|EC967627.1|EC967627
genomic: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggttta ... acctttgaagGATCTAGACGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: CAAAAGATCTTGGCGCAGACGATATTATCCGGGTTTCAACGAATATTCAG GATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTTEST: gi|110702886|gb|EE079247.1|EE079247
genomic: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggttta ... acctttgaagGATCTAGACGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAG GATCTAGACGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTTEST: gi|110401205|gb|EC967807.1|EC967807
genomic: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggttta ... acctttgaagGATCTAGACGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: CGAATATTCAG GATCTAGACGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTTEST: gi|37190683|gb|CF610032.1|CF610032
genomic: CGAATATTCAGgtttggttta ... acctttgaagGATCTAGACGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAG GATCTAGACGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTTEST: gi|110711540|gb|EE088133.1|EE088133
genomic: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggttta ... acctttgaagGATCTAGACGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: AAAAGATCTTGGCGCAGACGATATTATCCGGGTTTCA-CGAATATTTCAG -ATCTANATGAAGAAGTGG-AAAA-TACAAAGCACAEST: gi|37190343|gb|CF609692.1|CF609692
genomic: AAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATT-CAGgtttggttta ... acctttgaagGATCTAGACGAAGAAGTGGCAAAAATACAAAGCACA
EST: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAG GATCTAGACGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTTEST: gi|110712986|gb|EE088512.1|EE088512
genomic: CAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggttta ... acctttgaagGATCTAGACGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTT
EST: AAAAGATCTTGGGCGCAGACGACATTATCCGGGTTTCCACGAATAATCAG GATCTAGACGAAGAAGT
genomic: AAAAGATCTTGG-CGCAGACGACATTATCCGGGTTTCAACGAATATTCAGgtttggttta ... acctttgaagGATCTAGACGAAGAAGT
ccaagggattccatttctttccatttaacaatacaactggttttgacctttgaagGATCTAGACGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTTGATGTGAGCTTAGACTGTGTTGGCTTCAACAAAACCATGTCAACAGCTT
ttttgac putative branch site (score: 3)
ccttt CT-rich tract
atttaacaatacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttggtttaactatgtacaagtatctgtccttcatttcaggcctaggcatcaggggtgttgaaccaggagttatcgcatacacctaaggccttaaaaatctgtcatttgccaagggattccatttctttccatttaacaatacaactggttttgacctttgaagGATCTAGACGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTTGATGTGAGCTTAGACTGTGTTGGCTTCAACAAAACCATGTCAACAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT