Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgtttcagcatattatttcatagaccactaatttgacaaccaattgcttgaaatttaatttctcttgtgctctctatttcaaatctagattcataagaaattaatgatgcctctattcatagCTCACCCATGGTTGCGGGATGAAAACCATGCTGTGCCTCTTGATATTCTGGTCTACAAGTTGGTCAAATCATATGTTCGTGTCTCACCTTTCAAGCGTGC

Basic information

species Vitis vinifera
transcript Vv16s0098g01140.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26256876|gb|CA807939.1|CA807939
EST:     GCTTCTGAACAAGGATTACAGGAAAAGAATGACTGCTGCCCAAGCTCTAA                         CTCACCCATGGTTGCGGGATGAAAACCATGCTGTGCCTCTTGATATTCTGG
genomic: GCTTCTGAACAAGGATTACAGGAAAAGAATGACTGCTGCCCAAGCTCTAAgtaagttgtt ... ctattcatagCTCACCCATGGTTGCGGGATGAAAACCATGCTGTGCCTCTTGATATTCTGG
EST: gi|110720801|gb|EE097051.1|EE097051
EST:     GCTCCTGAACAAGGATTACAGGGAAAGAATGACTGCTGCCCAAGCTCTAA                         CTCACCCATGGGTTGNGGGATGAAAAACATGCTGTGCCTCTTGATATTCTG
genomic: GCTTCTGAACAAGGATTACAGGAAAAGAATGACTGCTGCCCAAGCTCTAAgtaagttgtt ... ctattcatagCTCACCCATGG-TTGCGGGATGAAAACCATGCTGTGCCTCTTGATATTCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctctctatttcaaatctagattcataagaaattaatgatgcctctattcatagCTCACCCATGGTTGCGGGATGAAAACCATGCTGTGCCTCTTGATATTCTGGTCTACAAGTTGGTCAAATCATATGTTCGTGTCTCACCTTTCAAGCGTGC
                               aattaat  putative branch site (score: 3)
                                          cctctattc  putative PPT
                     attcataagaaattaa  TA-rich tract