1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tttgttgggatgggatggggctccttttctaaagtacaccatactttgaattatcaaccaagttcctattttctaatcaattcagagatcttttgtgcagCTACATAAACAGGTCATTGCAGCCACCACATCTACCATCAACAGGTGTTTTCAATCAGCAGAAAAACTTTGGAGCTGATTCTGATAAACGTTTATCTCAG
species | Vitis vinifera |
transcript | Vv16s0098g00900.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCTGATGAAAGGCATACACTGAACCATTCTAACGGCTCGGCCTTTTCACG CTACATAAACAGGTCATTGCAGCCACCACATCTACCATCAACAGGTGTTTTEST: gi|161720360|gb|FC070170.1|FC070170
genomic: GCTGATGAAAGGCATACACTGAACCATTCTAATGGCTCGGCCTTTTCACGgtgagtctcc ... ttttgtgcagCTACATAAACAGGTCATTGCAGCCACCACATCTACCATCAACAGGTGTTTT
EST: GCTGATGAAAGGCATACACTTAACCATTCTAATGGCTCGGCCTTTTCACG CTACATAAACAGGTCATTGCAGCCACCACATCTACCATCAACAGGTGTTTT
genomic: GCTGATGAAAGGCATACACTGAACCATTCTAATGGCTCGGCCTTTTCACGgtgagtctcc ... ttttgtgcagCTACATAAACAGGTCATTGCAGCCACCACATCTACCATCAACAGGTGTTTT
ttgaattatcaaccaagttcctattttctaatcaattcagagatcttttgtgcagCTACATAAACAGGTCATTGCAGCCACCACATCTACCATCAACAGGTGTTTTCAATCAGCAGAAAAACTTTGGAGCTGATTCTGATAAACGTTTATCTCAG
ttctaat putative branch site (score: 2)
tcttttgt putative PPT
tattttctaatcaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgttgggatgggatggggctccttttctaaagtacaccatactttgaattatcaaccaagttcctattttctaatcaattcagagatcttttgtgcagCTACATAAACAGGTCATTGCAGCCACCACATCTACCATCAACAGGTGTTTTCAATCAGCAGAAAAACTTTGGAGCTGATTCTGATAAACGTTTATCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- tgttggg
- - - -ggatggg
- - - - - - - - - -gctcctt
- - - - - - - - - - - - - - - - - tacacca
- - - - - - - - - - - - - - - - - - - - - - - - - - -tcaacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caattca