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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtacttaattttcagcaaagagttactatttccattttctgataccatgcacacttaatatgattgtgcttcaatttactcgagaaaataaatcgaaaaatataattatcagctagagattgtagtatatgatatagttctaaataccactaatcttttccagGGTTCATTGGAATGGCTCTATCTTATGGGTTATCATTAAACTTGTCCCTGGTTAACAGTACTCGAAACATATGCACTCTAGAAAATTACATCATTTCTGT

Basic information

species Vitis vinifera
transcript Vv16s0050g02280.t01
intron # 6
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcagctagagattgtagtatatgatatagttctaaataccactaatcttttccagGGTTCATTGGAATGGCTCTATCTTATGGGTTATCATTAAACTTGTCCCTGGTTAACAGTACTCGAAACATATGCACTCTAGAAAATTACATCATTTCTGT
                                       cactaat  putative branch site (score: 2)
                                             tcttttcc  CT-rich tract
                 tatatgatatagttct  TA-rich tract