1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgtcaatttctacctagttttcaatcacactggcaggataatcaatacaatttcgggttttctgatattctttacaatgcttttttcccccagGAAAATGAACGGAGGCTATTGTACACAGAAATGAGGACATCGAAAATGAAAAATGGGAGTGATTCCAGAGGCATGTGAAAGAGAAGAAATGAGAGGTCTG
species | Vitis vinifera |
transcript | Vv16s0050g01870.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTCAGAGAGCTCAATTTACGAGGCAGTTCTCCATTGCAAGCGATCCATTG GAAAATGAACGGAGGCTATTGTACACAGAAATGAGGACATEST: gi|161717865|gb|FC066615.1|FC066615
genomic: TTCAGAGAGCTCAATTTACGAGGCAGTTCTCCATTGCAAGCGATCCATTGgtatgtcaat ... tttcccccagGAAAATGAACGGAGGCTATTGTACACAGAAATGAGGACAT
EST: TTCAGAGAGCTCAATTTACGAGGCAGTTCTCCATTGCAAGCGATCCATTG GAAAATGAACG
genomic: TTCAGAGAGCTCAATTTACGAGGCAGTTCTCCATTGCAAGCGATCCATTGgtatgtcaat ... tttcccccagGAAAATGAACG
taatcaatacaatttcgggttttctgatattctttacaatgcttttttcccccagGAAAATGAACGGAGGCTATTGTACACAGAAATGAGGACATCGAAAATGAAAAATGGGAGTGATTCCAGAGGCATGTGAAAGAGAAGAAATGAGAGGTCTG
ttctgat putative branch site (score: 3)
tgcttttttccccc putative PPT
atattctttacaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtcaatttctacctagttttcaatcacactggcaggataatcaatacaatttcgggttttctgatattctttacaatgcttttttcccccagGAAAATGAACGGAGGCTATTGTACACAGAAATGAGGACATCGAAAATGAAAAATGGGAGTGATTCCAGAGGCATGTGAAAGAGAAGAAATGAGAGGTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG