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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggggacatttatttatctatttcttcccattatcaaactttcagcttttggtttttatttatcttctttttttttcttttttttttaaatggatgttgaagatgtatcaattcattgcagGATATTGTCCAATCTAGACCTTCCAGGTTCCCAATATCCTCCCAGGATTTATTCAGTATCCTTGATGATGCAAGTGAAAAAACATTTTTATGTGCTGGCA

Basic information

species Vitis vinifera
transcript Vv16s0050g00700.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g00700.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA16G30100.1 (Glycine max), 3'ss of exon 6
gtaaggggacatttatttatctatttcttcccattatcaaactttc-agcttttggtttttatttatcttctttttttttcttttttttttaaatggatgttgaagatgtatcaattcattgcagGATATTGTCCAATCTAGACCTTCCAGGTTCCCAATATCCTCCCAGGATTTATTCAGTATCCTTGATGATGCAAGTGAAAAAACATTTTTATGTGCTGGCA-
                     ||         ||  ||   ||||  |  |  |  || || || |  |  |||   | | | | |||  || ||  |||   || |||| | ||||  |||||||||||||| ||||||| ||||||| | || || ||||| |||||||| || |||||||||||||||||||| |||||||| || | ||||||||  | || 
--------------------gtaagcagctttatggtctggctttttaattagtttttcttgttaaattgttttaaatatgtatctttggtatattaatgc--aatatgtctaaattgtttgcagGATATTGTTCAATCTAAACCTTCCTGCTTTCCTATATCTTCCCAGGAGTTGTTCAGTATCCTTGATGATGCTAGTGAAAATACTTGTTTATGTGG-GACAG

upper sequence: Vv16s0050g00700.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA10G37780.1 (Glycine max), 3'ss of exon 5
gtaaggggacatttatttatctatttcttcccattatcaaactttcagcttttggtttttatttatcttctttttttttcttttttttttaaatggatgttgaagatgtatcaattcattgcagGATATTGTCCAATCTAGACCTTCCAGGTTCCCAATATCCTCCCAGGATTTATTCAGTATCCTTGATGATGCAAGTGAAAAAACATTTTTA--TGTGCTGGCA
||||||  |||||      |||   |        ||||||   ||||  || ||||| || |||  ||  | | ||   ||  | | || | |         ||    | | |||   |||||| ||||||| ||||| || ||||| || || || ||||| ||||| || || ||||||||||| |||||| | |||||||||||||||||   ||     |  
gtaagga-acattgcgcggtcttgct--------tatcaattattca--ttctggttatttttttgctggtatattccactggtatattaaca--------aaatccatctaaatcttttgcagAATATTGTTCAATCCAGGCCTTCTAGTTTTCCTATATCTTCCCAAGAGTTGTTCAGTATCCTAGATGATTCTAGTGAAAAAACATTTTTGGTTGGATCAG--

upper sequence: Vv16s0050g00700.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA20G30060.1 (Glycine max), 3'ss of exon 2
gtaaggggacatttatttatctatttcttcccattatcaaactttcagcttttggtttttatttatcttctttttttttcttttttttttaaatggatgttgaagatgtatcaattcattgcagGATATTGTCCAATCTAGACCTTCCAGGTTCCCAATATCCTCCCAGGATTTATTCAGTATCCTTGATGATGCAAGTGAAAAAACATTTTTA--TGTGCTGGCA
||||||  |||||      | |  |  | |   |||||||   |||   || |||||   |||| ||| |   |   ||| | |          ||      ||    | | |||   |||||| ||||||| ||||| || ||||| || || || | ||| ||||| || |||||||||||| | |||||| | |||||||||||||||||   ||     |  
gtaagga-acatt-----gtgtggtcttgc---ttatcaattattcg--ttctggtt---atttttctgccgatacattcctct----------ggtaacacaatccatctaaatcttttgcagAATATTGTTCAATCCAGGCCTTCTAGTTTTCCTAAATCTTCCCAAGAGTTATTCAGTATCTTAGATGATTCTAGTGAAAAAACATTTTTGGTTGGATCAG--


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttttttttcttttttttttaaatggatgttgaagatgtatcaattcattgcagGATATTGTCCAATCTAGACCTTCCAGGTTCCCAATATCCTCCCAGGATTTATTCAGTATCCTTGATGATGCAAGTGAAAAAACATTTTTATGTGCTGGCA
     tttttctttttttttt  TA-rich tract