1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtagctgtttgtgtgagtttttcttccatcttgctagaacccacacaatcgctttcattaactcttcttggtaattactagGCGGTCATATGTTTGCATAGAAAAGTGGCATCAAAAGACCACAAGCTTGTGTATTGGGTTGCGGGTGGAACTTCCGCCCTCTCTGTACTGCTGGAGAAGA
species | Vitis vinifera |
transcript | Vv16s0039g02700.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTGCTGTTCGTTCAACAACATTCTTGTCCGCTTTCGTCGGAATCTTTCAG GCGGCCATATGTTTGCATAGAAAAGTGGCATCAAAAGACCACAAGCTTGTGEST: gi|110391701|gb|EC956697.1|EC956697
genomic: GTGCTGTTCGTTCAACAACATTCTTGTCTGCTTTCGTCGGAATCTTTCAGgtagctgttt ... taattactagGCGGTCATATGTTTGCATAGAAAAGTGGCATCAAAAGACCACAAGCTTGTG
EST: GTGCTGTTCGTTCAACAACATTCTTGTCCGCTTTCGTCGGAATCTTTCAG GCGGCCATATGTTTGCATAGAAAAGTGGCATCAAAAGACCACAAGCTTGTGEST: gi|294965652|gb|GW837251.1|GW837251
genomic: GTGCTGTTCGTTCAACAACATTCTTGTCTGCTTTCGTCGGAATCTTTCAGgtagctgttt ... taattactagGCGGTCATATGTTTGCATAGAAAAGTGGCATCAAAAGACCACAAGCTTGTG
EST: GTGCTGTTCGTTCAACAACATTCTTGTCTGCTTTCGTCGGAATCTTTCAG GCGGTCATATGTTTGCATAGAAAAGTGGCATCAAAAGACCACAAGCTTGTG
genomic: GTGCTGTTCGTTCAACAACATTCTTGTCTGCTTTCGTCGGAATCTTTCAGgtagctgttt ... taattactagGCGGTCATATGTTTGCATAGAAAAGTGGCATCAAAAGACCACAAGCTTGTG
catcttgctagaacccacacaatcgctttcattaactcttcttggtaattactagGCGGTCATATGTTTGCATAGAAAAGTGGCATCAAAAGACCACAAGCTTGTGTATTGGGTTGCGGGTGGAACTTCCGCCCTCTCTGTACTGCTGGAGAAGA
cattaac putative branch site (score: 2)
tttcattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagctgtttgtgtgagtttttcttccatcttgctagaacccacacaatcgctttcattaactcttcttggtaattactagGCGGTCATATGTTTGCATAGAAAAGTGGCATCAAAAGACCACAAGCTTGTGTATTGGGTTGCGGGTGGAACTTCCGCCCTCTCTGTACTGCTGGAGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA