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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcaaaactcctccaacttcagttgggaaagcaaccattttttcagtttcttctgttcttaatgattttcctcctgcagGACTTTCGAGGCTTTAAGTTGGCTGATGGATGAAGCTGCAGAATTGGGCACTTAGACATCAAAGTCATGAATATTAATTGATTATTTTCAGGTTCTGTTT

Basic information

species Vitis vinifera
transcript Vv16s0039g02240.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26264563|gb|CA815626.1|CA815626
EST:     AGAGCCGCTGGATACTCCTCAGTGGGCACTTCATCCTTCTAACCAACCAG                         GACTTTCGAGGCTCTAAGTTGGCTGATGGATGAAGCTGCAGAATTGGGCAC
genomic: AGAGCCGCTGGATACTCCTCAGTGGGCACTTCATCCTTCTAACCAACCAGgtcaaaactc ... cctcctgcagGACTTTCGAGGCTTTAAGTTGGCTGATGGATGAAGCTGCAGAATTGGGCAC
EST: gi|30296696|gb|CB973490.1|CB973490
EST:     AGAGCCGCTGGATACTCCTCAGTGGGCACTTCATCCTTCTAACCAACCAG                         GACTTTCGAGGCTTTAAGTTGGCTGATGGATGAAGCTGCAGAATTGGGCAC
genomic: AGAGCCGCTGGATACTCCTCAGTGGGCACTTCATCCTTCTAACCAACCAGgtcaaaactc ... cctcctgcagGACTTTCGAGGCTTTAAGTTGGCTGATGGATGAAGCTGCAGAATTGGGCAC
EST: gi|71879757|gb|DT028812.1|DT028812
EST:     AGAGCCGCTGGATACTCCTCAGTGGGCACTTCATCCTTCTAACCAACCAG                         GACTTTCGAGGCTCTAAGTTGGCTGATGGATGAAGCTGCAGAATTGGGCAC
genomic: AGAGCCGCTGGATACTCCTCAGTGGGCACTTCATCCTTCTAACCAACCAGgtcaaaactc ... cctcctgcagGACTTTCGAGGCTTTAAGTTGGCTGATGGATGAAGCTGCAGAATTGGGCAC
EST: gi|71880432|gb|DT029487.1|DT029487
EST:     AGAGCCGCTGGATACTCCTCAGTGGGCACTTCATCCTTCTAACCAACCAG                         GACTTTCGAGGCTCTAAGTTGGCTGATGGATGAAGCTGCAGAATTGGGCAC
genomic: AGAGCCGCTGGATACTCCTCAGTGGGCACTTCATCCTTCTAACCAACCAGgtcaaaactc ... cctcctgcagGACTTTCGAGGCTTTAAGTTGGCTGATGGATGAAGCTGCAGAATTGGGCAC
EST: gi|71878380|gb|DT027435.1|DT027435
EST:     AGAGCCGCTGGATACTCCTCAGTGGGCACTTCATCCTTCTAACCAACCAG                         GACTTTCGAGGCTCTAAGTTGGCTGATGGATGAAGCTGCAGAATTGGGCAC
genomic: AGAGCCGCTGGATACTCCTCAGTGGGCACTTCATCCTTCTAACCAACCAGgtcaaaactc ... cctcctgcagGACTTTCGAGGCTTTAAGTTGGCTGATGGATGAAGCTGCAGAATTGGGCAC
EST: gi|71880637|gb|DT029692.1|DT029692
EST:     AGAGCCGCTGGATACTCCTCAGTGGGCACTTCATCCTTCTAACCAACCAG                         GACTTTCGAGGCTCTAAGTTGGCTGATGGATGAAGCTGCAGAATTGGGCAC
genomic: AGAGCCGCTGGATACTCCTCAGTGGGCACTTCATCCTTCTAACCAACCAGgtcaaaactc ... cctcctgcagGACTTTCGAGGCTTTAAGTTGGCTGATGGATGAAGCTGCAGAATTGGGCAC
EST: gi|110430069|gb|EC996597.1|EC996597
EST:     AGAGCCGCTGGATACTCCTCAGTGGGCACTTCATCCTTCTAACCAACCAG                         GACTTTCGAGGCTCTAAGTTGGCTGATGGATGAAGCTGCAGAATTGGGCAC
genomic: AGAGCCGCTGGATACTCCTCAGTGGGCACTTCATCCTTCTAACCAACCAGgtcaaaactc ... cctcctgcagGACTTTCGAGGCTTTAAGTTGGCTGATGGATGAAGCTGCAGAATTGGGCAC
EST: gi|30133341|gb|CB918680.1|CB918680
EST:     CTTCATCCTTCTAACCAACCAG                         GACTTTCGAGGCTCTAAGTTGGCTGATGGATGAAGCTGCAGAATTGGGCAC
genomic: CTTCATCCTTCTAACCAACCAGgtcaaaactc ... cctcctgcagGACTTTCGAGGCTTTAAGTTGGCTGATGGATGAAGCTGCAGAATTGGGCAC
EST: gi|110716367|gb|EE091287.1|EE091287
EST:     AGAGCCGCTGGATACTCCTCAGTGGGCACTTCATCCTTCTAACCAACCAG                         GACTTTCGAGGCTCTAAGTTGGCTGATGGATGAAGCTGCAGAATTGGGCAC
genomic: AGAGCCGCTGGATACTCCTCAGTGGGCACTTCATCCTTCTAACCAACCAGgtcaaaactc ... cctcctgcagGACTTTCGAGGCTTTAAGTTGGCTGATGGATGAAGCTGCAGAATTGGGCAC
EST: gi|71880723|gb|DT029778.1|DT029778
EST:     AGAGCCGCTGGATACTCCTCAGTGGGCACTTCATCCTTCTAACCAACCAG                         GACTTTCGAGGCTCTAAGTTGGCTGATGGATGAAGCTGC
genomic: AGAGCCGCTGGATACTCCTCAGTGGGCACTTCATCCTTCTAACCAACCAGgtcaaaactc ... cctcctgcagGACTTTCGAGGCTTTAAGTTGGCTGATGGATGAAGCTGC
EST: gi|33409512|gb|CF215139.1|CF215139
EST:     AGAGCCGCTGGATACTCCTCAGTGGGCACTTCATCCTTCTAACCAACCAG                         GACTTTCGAGGCTTTAAGTTGGCTGATGGATGAAGCTGCAGAATTGGGCAC
genomic: AGAGCCGCTGGATACTCCTCAGTGGGCACTTCATCCTTCTAACCAACCAGgtcaaaactc ... cctcctgcagGACTTTCGAGGCTTTAAGTTGGCTGATGGATGAAGCTGCAGAATTGGGCAC
EST: gi|110729888|gb|EE106340.1|EE106340
EST:     AGAGCCGCTGGATACTCCTCAGTGGGCACTTCATCCTTCTAACCAACCAG                         GACTTTCGAGGCTCTAAGTTGGCTGATGGATGAAGCTGCANAATTGGGCAC
genomic: AGAGCCGCTGGATACTCCTCAGTGGGCACTTCATCCTTCTAACCAACCAGgtcaaaactc ... cctcctgcagGACTTTCGAGGCTTTAAGTTGGCTGATGGATGAAGCTGCAGAATTGGGCAC
EST: gi|71879383|gb|DT028438.1|DT028438
EST:     AGAGCCGCTGGATACTCCTCAGTGGGCACTTCATCCTTCTAACCAACCAG                         GACTTTCGAGGCTCTAAGTTGGCTGATGGATGAAGCTGCAGAATTGGGCA
genomic: AGAGCCGCTGGATACTCCTCAGTGGGCACTTCATCCTTCTAACCAACCAGgtcaaaactc ... cctcctgcagGACTTTCGAGGCTTTAAGTTGGCTGATGGATGAAGCTGCAGAATTGGGCA
EST: gi|351036486|gb|FQ457199.1|FQ457199
EST:     AGAGCCGCTGGATACTCCTCAGTGGGCACTTCATCCTTCTAACCAACCAG                         GACTTTCGAGGCTCTAAGTTGGCTGATGGATGAAGCTGCAGAATTGGGCAC
genomic: AGAGCCGCTGGATACTCCTCAGTGGGCACTTCATCCTTCTAACCAACCAGgtcaaaactc ... cctcctgcagGACTTTCGAGGCTTTAAGTTGGCTGATGGATGAAGCTGCAGAATTGGGCAC
EST: gi|110375930|gb|EC940960.1|EC940960
EST:     AGAGCCGCTGGATACTCCTCAGTGGGCACTTCATCCTTCTAACCAACCAG                         GACTTTCGAGGCTCTAAGTTGGCTGATGGATGAAGCTGCAGAATTGGGCAC
genomic: AGAGCCGCTGGATACTCCTCAGTGGGCACTTCATCCTTCTAACCAACCAGgtcaaaactc ... cctcctgcagGACTTTCGAGGCTTTAAGTTGGCTGATGGATGAAGCTGCAGAATTGGGCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggaaagcaaccattttttcagtttcttctgttcttaatgattttcctcctgcagGACTTTCGAGGCTTTAAGTTGGCTGATGGATGAAGCTGCAGAATTGGGCACTTAGACATCAAAGTCATGAATATTAATTGATTATTTTCAGGTTCTGTTT
                                tcttaat  putative branch site (score: 3)
                                         ttttcctcctgc  putative PPT
                               ttcttaatgatttt  TA-rich tract