Sequence
atgc intronic sequence ATGC exonic sequencegttagatgatctcatctgatacttgtgagttatcagctataagacgatgtagttgcttcattcacaaaaaaagcataaacttttccagATATGAATCTGAGTTCTTCCAAAATGTTGTCAATGGACGGGATATTGTGTCTTGGGGAGCTGTTGACCGCAATCGTTCTAATGGTGAAAGTGATGAAATT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0039g01810.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA01G44350.1 (Glycine max), 3'ss of exon 2
gttagatgatctcatctgatact---tgtgagttatcagctataagacgatgtagttgcttcattcacaaaaaaagcataaacttttccagATATGAATCTGAGTTCTTCCAAAATGTTGTCAATGGACGGGATATTGTGTCTTGGGGAGCTGTTGACCGCAATCGTTCTAATGGTGAAAGTGATGAAATT
|| || | || | | | || | | |||| || ||| || || | ||| | | || | | | || || ||| || ||||| || ||||| |||| || |||||||| || |||||||| ||||||||||||||| ||| ||| || ||||| ||||||||||| |
gtcaggtcatgtgttgttttattgacttcaagtt--caagtatgagctcttgaaattgtgtttacccaaagatatttacaa---ttctcagGTACGAATCCACTTTTTTCCATGATGTGGTAAATGGACGTGACATTGTGTCATGGGGAGCTGTTGACAGCAGTCGGTCGGATGGTCAAAGTGATGAACTC
upper sequence: Vv16s0039g01810.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA11G01170.1 (Glycine max), 3'ss of exon 2
gttagatgatct--catctgatacttgtgagttatcagctataagacgatgtagttgcttcattcacaaaaaaagcataaacttttccagATATGAATCTGAGTTCTTCCAAAATGTTGTCAATGGACGGGATATTGTGTCTTGGGGAGCTGTTGACCGCAATCGTTCTAATGGTGAAAGTGATGAAATT
|| |||| || | ||| | || | | | ||| ||| || || | ||| | | || | | | || || ||| || |||||| || ||||| |||| || |||||||| || |||||||| ||||||||||||||| ||| ||| | ||||| ||||||||||| |
gtgagatcatgtgccattttattgacttcaagt-tcaagtatgagctcttgaaattgtgtttacccaaagatatctacaa---ttctcagGTACGAATCTACTTTTTTCCATGATGTGGTAAATGGACGTGACATTGTGTCATGGGGAGCTGTTGACAGCAGTCGGCCGGATGGTCAAAGTGATGAACTC
upper sequence: Vv16s0039g01810.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT5G16800.1 (Arabidopsis thaliana), 3'ss of exon 1
---gttagatgatctcatct-----gatacttgtgagttatcagctataagacgatgtagttgcttcattcacaaaa--------aaagca--taaacttttccagATATGAATCTGAGTTCTTCCAAAATGTTGTCAATGGACGGGATATTGTGTCTTGGGGAGCTGTTGACCGCAATCGTTCTAATGGTGAAAGTGATGAAATT
|| || | | | | || | || ||| | | | | || || | | || || |||||| | | || | ||| ||||| |||||||| || || ||||||||||| ||| | |||||||| ||||||| |||||||| || | ||| || ||||| | ||| ||| ||
gtaaataaatacctttgttttggaaagaatttatatgtgatctggttttgggatttgactttccgttttttggaagtgtcttatcaaagcatttgattttgttcagGTATGAGTCTGAGTTTTTTCAGAATGTTGTCAACGGAGGTGATATTGTCTCTTGGGCTGCTGTTGATCGGAGTCGCCCTGATGGTCATTCTGAGGAACTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cagctataagacgatgtagttgcttcattcacaaaaaaagcataaacttttccagATATGAATCTGAGTTCTTCCAAAATGTTGTCAATGGACGGGATATTGTGTCTTGGGGAGCTGTTGACCGCAATCGTTCTAATGGTGAAAGTGATGAAATT
cttttcc CT-rich tract
aaaaaaagcataaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttagatgatctcatctgatacttgtgagttatcagctataagacgatgtagttgcttcattcacaaaaaaagcataaacttttccagATATGAATCTGAGTTCTTCCAAAATGTTGTCAATGGACGGGATATTGTGTCTTGGGGAGCTGTTGACCGCAATCGTTCTAATGGTGAAAGTGATGAAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT