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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagtaaatgtaaattgcaataaaccgagctagtgttaacttttttacactttttttttctgttttgtgatttattatgtgtttatttgatcagGGTGAGAAACCAATAAAGGAGCATAACTGATGCCCTGATGATCGAAGGATATAGGTTGGGTTTTGCTACCACAACATGTCACAAGCCTGGAGTAATATGT

Basic information

species Vitis vinifera
transcript Vv16s0039g01410.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22010470|gb|BQ795504.1|BQ795504
EST:     TGCTATCATTACATGTCGAAAGCCCAAATGAGTTACACATTTGGAAAAAT                         GGTGAGAAACCAATAAAGGAGCATAACTGATGCCCTGATGATCGAAGGATA
genomic: TGCTATCATTACATGTCGAAAGCCCGAATGAGTTACACATTTGGAAAAATgtaagagtaa ... atttgatcagGGTGAGAAACCAATAAAGGAGCATAACTGATGCCCTGATGATCGAAGGATA
EST: gi|22012614|gb|BQ797648.1|BQ797648
EST:     TGCTATCATTACATGTCGAAAGCCCAAATGAGTTACACATTTGGAAAAAT                         GGTGAGAAACCAATAAAGGAGCATAACTGATGCCCTGATGATCGAAGGATA
genomic: TGCTATCATTACATGTCGAAAGCCCGAATGAGTTACACATTTGGAAAAATgtaagagtaa ... atttgatcagGGTGAGAAACCAATAAAGGAGCATAACTGATGCCCTGATGATCGAAGGATA
EST: gi|27585118|gb|CB007813.1|CB007813
EST:     TGCTATCATTACATGTCGAAAGCCCGAATGAGTTACACATTTGGAAAAAT                         GGTGAGAAACCAATAAAGGAGCATAACTGATGCCCTGATGATCGAAGGATA
genomic: TGCTATCATTACATGTCGAAAGCCCGAATGAGTTACACATTTGGAAAAATgtaagagtaa ... atttgatcagGGTGAGAAACCAATAAAGGAGCATAACTGATGCCCTGATGATCGAAGGATA
EST: gi|110360881|gb|EC924323.1|EC924323
EST:     TGCTATCATTACATGTCGAAAGCCCGAATGAGTTACACATTTGGAAAAAT                         GGTGAGAAACCAATAAAGGAGCATAACTGATGCCCTGATGATCGAAGGATA
genomic: TGCTATCATTACATGTCGAAAGCCCGAATGAGTTACACATTTGGAAAAATgtaagagtaa ... atttgatcagGGTGAGAAACCAATAAAGGAGCATAACTGATGCCCTGATGATCGAAGGATA
EST: gi|110423065|gb|EC989400.1|EC989400
EST:     TGCTATCATTACATGTCGAAAGCCCAAATGAGTTACACATTTGGAAAAAT                         GGTGAGAAACCAATAAAGGAGCATAACTGATGCCCTGATGATCGAAGGATA
genomic: TGCTATCATTACATGTCGAAAGCCCGAATGAGTTACACATTTGGAAAAATgtaagagtaa ... atttgatcagGGTGAGAAACCAATAAAGGAGCATAACTGATGCCCTGATGATCGAAGGATA
EST: gi|34547143|gb|CF515375.1|CF515375
EST:     TGCTATCATTACATGTCGAAAGCCCGAATGAGTTACACATTTGGAAAAAT                         GGTGAGAAACCAATAAAGGAGCATAACTGATGCCCTGATGATCGAAGGATA
genomic: TGCTATCATTACATGTCGAAAGCCCGAATGAGTTACACATTTGGAAAAATgtaagagtaa ... atttgatcagGGTGAGAAACCAATAAAGGAGCATAACTGATGCCCTGATGATCGAAGGATA
EST: gi|30327692|gb|CD010954.1|CD010954
EST:     TGCTATCATTACATGTCGAAAGCCCGAATGAGTTACACATTTGGAAAAAT                         GGTGAGAAACCAATAAAGGAGCATAACTGATGCCCTGATGATCGAAGGATA
genomic: TGCTATCATTACATGTCGAAAGCCCGAATGAGTTACACATTTGGAAAAATgtaagagtaa ... atttgatcagGGTGAGAAACCAATAAAGGAGCATAACTGATGCCCTGATGATCGAAGGATA
EST: gi|32249517|gb|CD715336.1|CD715336
EST:     TGCTATCATTACATGTCGAAAGCCCGAATGAGTTACACATTTGGAAAAAT                         GGTGAGAAACCAATAAAGGAGCATAACCGATGCCCTGATGATCGAAGGATA
genomic: TGCTATCATTACATGTCGAAAGCCCGAATGAGTTACACATTTGGAAAAATgtaagagtaa ... atttgatcagGGTGAGAAACCAATAAAGGAGCATAACTGATGCCCTGATGATCGAAGGATA
EST: gi|32271736|gb|CD720895.1|CD720895
EST:     TGCTATCATTACATGTCGAAAGCCCGAATGAGTTACACATTTGGAAAAAT                         GGTGAGAAACCAATAAAGGAGCATAACCGATGCCCTGATGATCGAAGGATA
genomic: TGCTATCATTACATGTCGAAAGCCCGAATGAGTTACACATTTGGAAAAATgtaagagtaa ... atttgatcagGGTGAGAAACCAATAAAGGAGCATAACTGATGCCCTGATGATCGAAGGATA
EST: gi|32269217|gb|CD718376.1|CD718376
EST:     TGCTATCATTACATGTCGAAAGCCCGAATGAGTTACACATTTGGAAAAAT                         GGTGAGAAACCAATAAAGGAGCATAACCGATGCCCTGATGATCGAAGGATA
genomic: TGCTATCATTACATGTCGAAAGCCCGAATGAGTTACACATTTGGAAAAATgtaagagtaa ... atttgatcagGGTGAGAAACCAATAAAGGAGCATAACTGATGCCCTGATGATCGAAGGATA
EST: gi|32247466|gb|CD713285.1|CD713285
EST:     TGCTATCATTACATGTCGAAAGCCCGAATGAGTTACACATTTGGAAAAAT                         GGTGAGAAACCAATAAAGGAGCATAACCGATGCCCTGATGATCGAAGGATA
genomic: TGCTATCATTACATGTCGAAAGCCCGAATGAGTTACACATTTGGAAAAATgtaagagtaa ... atttgatcagGGTGAGAAACCAATAAAGGAGCATAACTGATGCCCTGATGATCGAAGGATA
EST: gi|32270284|gb|CD719443.1|CD719443
EST:     TGCTATCATTACATGTCGAAAGCCCGAATGAGTTACACATTTGGAAAAAT                         GGTGAGAAACCAATAAAGGAGCATAACCGATGCCCTGATGATCGAAGGATA
genomic: TGCTATCATTACATGTCGAAAGCCCGAATGAGTTACACATTTGGAAAAATgtaagagtaa ... atttgatcagGGTGAGAAACCAATAAAGGAGCATAACTGATGCCCTGATGATCGAAGGATA
EST: gi|83275165|gb|DV939261.1|DV939261
EST:     TGCTATCATTACATGTCGAAAGCCCGAATGAGTTACACATTTGGAAAAAT                         GGTGAGAAACCAATAAAGGAGCATAACTGATGCCCTGATGATCGAAGGATA
genomic: TGCTATCATTACATGTCGAAAGCCCGAATGAGTTACACATTTGGAAAAATgtaagagtaa ... atttgatcagGGTGAGAAACCAATAAAGGAGCATAACTGATGCCCTGATGATCGAAGGATA
EST: gi|32268132|gb|CD717291.1|CD717291
EST:     TGCTATCATTACATGTCGAAAGCCCGAATGAGTTACACATTTGGAAAAAT                         GGTGAGAAACCAATAAAGGAGCATAACCGATGCCCTGATGATCGAAGGATA
genomic: TGCTATCATTACATGTCGAAAGCCCGAATGAGTTACACATTTGGAAAAATgtaagagtaa ... atttgatcagGGTGAGAAACCAATAAAGGAGCATAACTGATGCCCTGATGATCGAAGGATA
EST: gi|110425522|gb|EC991909.1|EC991909
EST:     TGCTATCATTACATGTCGAAAGCCCAAATGAGTTACACATTTGGAAAAAT                         GGTGAGAAACCAATAAAGGAGCATAACTGATGCCCTGATGATCGAAGGATA
genomic: TGCTATCATTACATGTCGAAAGCCCGAATGAGTTACACATTTGGAAAAATgtaagagtaa ... atttgatcagGGTGAGAAACCAATAAAGGAGCATAACTGATGCCCTGATGATCGAAGGATA
EST: gi|110697255|gb|EE074081.1|EE074081
EST:     TGCTATCATTACATGTCGAAAGCCCGAATGAGTTACACATTTGGAAAAAT                         GGTGAGAAACCAATAAAGGAGCATAACTGATGCCCTGATGATCGAAGGATA
genomic: TGCTATCATTACATGTCGAAAGCCCGAATGAGTTACACATTTGGAAAAATgtaagagtaa ... atttgatcagGGTGAGAAACCAATAAAGGAGCATAACTGATGCCCTGATGATCGAAGGATA
EST: gi|34547232|gb|CF515464.1|CF515464
EST:     TGCTATCATTACATGTCGAAAGCCCGAATGAGTTACACATTTGGAAAAAT                         GGTGAGAAACCAATAAAGGAGCATAACTGATGCCCTGATGATCGAAGGATA
genomic: TGCTATCATTACATGTCGAAAGCCCGAATGAGTTACACATTTGGAAAAATgtaagagtaa ... atttgatcagGGTGAGAAACCAATAAAGGAGCATAACTGATGCCCTGATGATCGAAGGATA
EST: gi|110421515|gb|EC987813.1|EC987813
EST:     TGCTATCATTACATGTCGAAAGCCCAAATGAGTTACACATTTGGAAAAAT                         GGTGAGAAACCAATAAAGGAGCATAACTGATGCCCTGATGATCGAAGGATA
genomic: TGCTATCATTACATGTCGAAAGCCCGAATGAGTTACACATTTGGAAAAATgtaagagtaa ... atttgatcagGGTGAGAAACCAATAAAGGAGCATAACTGATGCCCTGATGATCGAAGGATA
EST: gi|110416731|gb|EC982731.1|EC982731
EST:     TGCTATCATTACATGTCGAAAGCCCGAATGAGTTACACATTTGGAAAAAT                         GGTGAGAAACCAATAAAGGAGCATAACTGATGCCCTGATGATCGAAGGATA
genomic: TGCTATCATTACATGTCGAAAGCCCGAATGAGTTACACATTTGGAAAAATgtaagagtaa ... atttgatcagGGTGAGAAACCAATAAAGGAGCATAACTGATGCCCTGATGATCGAAGGATA
EST: gi|110376167|gb|EC941211.1|EC941211
EST:     TGCTATCATTACATGTCGAAAGCCCGAATGAGTTACACATTTGGAAAAAT                         GGTGAGAAACCAATAAAGGAGCATAACTGATGCCCTGATGATCGAAGGATA
genomic: TGCTATCATTACATGTCGAAAGCCCGAATGAGTTACACATTTGGAAAAATgtaagagtaa ... atttgatcagGGTGAGAAACCAATAAAGGAGCATAACTGATGCCCTGATGATCGAAGGATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttttacactttttttttctgttttgtgatttattatgtgtttatttgatcagGGTGAGAAACCAATAAAGGAGCATAACTGATGCCCTGATGATCGAAGGATATAGGTTGGGTTTTGCTACCACAACATGTCACAAGCCTGGAGTAATATGT
                                          tttattt  CT-rich tract
           tttttttttctgtttt  TA-rich tract