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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagggttgttgtgagcacctgaagctcattaaattatctggttattcagtagtattgtttggctgacagactctcttttgttctcttcaattggtttgtcagTATTGGAAGACAATAGCACAGTGTGTAGATGATATTCTGAAAGACTACCCTCGTCTGCGATTAACTCATGGCCGGAAG

Basic information

species Vitis vinifera
transcript Vv16s0022g00660.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30254979|gb|CB971426.1|CB971426
EST:     AAAATAATAAGTTCTGTGTCTCTGTACATTACCGCAATGTGGATGAGAAG                         TATTGGAAGACAATAGCACAGTGTGTAGATGATATTCTGAAAGACTACCCT
genomic: AAAATAATAAGTTCTGTGTCTCTGTACATTACCGCAATGTGGATGAGAAGgtagggttgt ... ggtttgtcagTATTGGAAGACAATAGCACAGTGTGTAGATGATATTCTGAAAGACTACCCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtagtattgtttggctgacagactctcttttgttctcttcaattggtttgtcagTATTGGAAGACAATAGCACAGTGTGTAGATGATATTCTGAAAGACTACCCTCGTCTGCGATTAACTCATGGCCGGAAG
             ggctgac  putative branch site (score: 3)
     tattgttt  TA-rich tract