Sequence
atgc intronic sequence ATGC exonic sequence...tcacctccttctagtgggggtatgatacaacccaagttcaacactgaaacttcagaaatttccagtttgtgaactagggataaatttatctattttgcagGTCATGTGCCCCACATGCCTCTGTACTGGGATGGAAATGGCGAGCGAGCATGATCCACGAATAGATCCCTTTGACTAGAGTTGCATCATTTCCTTCATAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0013g00350.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA09G36770.2 (Glycine max), 3'ss of exon 7
tcacctccttctagtgggggtatgatacaacccaagttcaac---actgaaacttcagaaatttccagtttgtgaactagggataaattt--atctatt-ttgcagGTCATGTGCCCCACATGCCTCTGTACTGGGATGGAAATGGCGAGCGAGCATGATCCACGAATAGATCCCTTTGACTAGAGTTGCATCATTTCCTTCATAC
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------taaattggtacaagttatttacttgctaggttcacagcaacagtggttgttgagtttttttttatcccaatcatgttcaactctgaatctcttcttgcagGTTATGTGTCCAACATGTCTCTGCACTGGAATGGCCATGGCAAGCGAACATGATCCACGAATTGATCCTTTTGATTAGAG--------------------
upper sequence: Vv16s0013g00350.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA09G36770.3 (Glycine max), 3'ss of exon 7
tcacctccttctagtgggggtatgatacaacccaagttca---acactgaaacttcagaaatttccagtttgtgaactagggataaattt--atctatt-ttgcagGTCATGTGCCCCACATGCCTCTGTACTGGGATGGAAATGGCGAGCGAGCATGATCCACGAATAGATCCCTTTGACTAGAG-TTGCATCATTTCCTTCATAC
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------taaattggtacaagttatttacttgctaggttcacagcaacagtggttgttgagtttttttttatcccaatcatgttcaactctgaatctcttcttgcagGTTATGTGTCCAACATGTCTCTGCACTGGAATGGCCATGGCAAGCGAACATGATCCACGAATTGATCCTTTTGATTAGAGGTTCAATAATTATAGTTATC-
upper sequence: Vv16s0013g00350.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA12G00600.1 (Glycine max), 3'ss of exon 7
-tcacctccttctagtgggggtatgatacaacccaagttcaacactgaaacttcagaaatttccagtttgtgaactagggataaatttatctattttgcagGTCATGTGCCCCACATGCCTCTGTACTGGGATGGAAATGGCGAGCGAGCATGATCCACGAATAGATCCCTTTGACTAGAGTTGCA-TCATTTCCTTCATAC
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ataaattggtacaagttgttacttgctaggtccacagcaccacagtggttgttgagtgttttttcttctatcatgctcaactctgaatctctgatt-gcagGTTATGTGTCCAACATGTCTTTGCACTGGAATGGCCATGGCAAGCGAACATGATCCACGAATTGATCCATTTGATTAGAGGTTCAGTAATTATAGTTATC-
upper sequence: Vv16s0013g00350.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA12G00600.3 (Glycine max), 3'ss of exon 7
-tcacctccttctagtgggggtatgatacaacccaagttcaacactgaaacttcagaaatttccagtttgtgaactagggataaatttatctattttgcagGTCATGTGCCCCACATGCCTCTGTACTGGGATGGAAATGGCGAGCGAGCATGATCCACGAATAGATCCCTTTGACTAGAGTTGCATCATTTCCTTCATAC
| | | | | ||| | || || || || | ||| || || || ||| | | | | | | ||| || |||||| ||||| || ||||| || || ||||| |||| ||||| ||||| |||||||||||||| ||||| ||||| |||||
ataaattggtacaagttgttacttgctaggtccacagcaccacagtggttgttgagtgttttttcttctatcatgctcaactctgaatctctgatt-gcagGTTATGTGTCCAACATGTCTTTGCACTGGAATGGCCATGGCAAGCGAACATGATCCACGAATTGATCCATTTGATTAGAG-------------------- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaaacttcagaaatttccagtttgtgaactagggataaatttatctattttgcagGTCATGTGCCCCACATGCCTCTGTACTGGGATGGAAATGGCGAGCGAGCATGATCCACGAATAGATCCCTTTGACTAGAGTTGCATCATTTCCTTCATAC
tctatttt CT-rich tract
ataaatttatctattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcacctccttctagtgggggtatgatacaacccaagttcaacactgaaacttcagaaatttccagtttgtgaactagggataaatttatctattttgcagGTCATGTGCCCCACATGCCTCTGTACTGGGATGGAAATGGCGAGCGAGCATGATCCACGAATAGATCCCTTTGACTAGAGTTGCATCATTTCCTTCATAC
- -cctcctt
- - - - - - -gtggggg
- - - - - - - - - - - - - -caaccca
- - - - - - - - - - - - - - - - - - - caacact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggataaa