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gtaagcttttcttgagtatgaagaaagtgaaggtggaagttatgatttatgctgcaattattgtctcattagtagtatgtggtgataatcttgttctttgtattacattcatgttaaaatggtaaatttgttatctatatcttgtcaaagtatttaggttttgtggttttgatgcatgccgcagGTCAATCCCCAGACTCATCAGCTAAAGATATGTGATTTTGGGAGTGCAAAGAAGTTG
species | Vitis vinifera |
transcript | Vv15s0048g02010.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACAGTGTTATTGGGGTCTGTCATCGTGATATCAAGCCTCAGAATTTATTG GTCAATCCCCAGACTCATCAGCTAAAGATATGTGATTTTGGGAGTGCAAAGEST: gi|110688693|gb|EE067533.1|EE067533
genomic: ACAGTGTTATTGGGGTCTGTCATCGTGATATCAAGCCTCAGAATTTATTGgtaagctttt ... catgccgcagGTCAATCCCCAGACTCATCAGCTAAAGATATGTGATTTTGGGAGTGCAAAG
EST: ACAGTGTTATTGGGGTCTGTCATCGTGATATCAAGCCTCAGAATTTATTG GTCAATCCCCAGACTCATCAGCTAAAGATATGTGATTTTGGGAGTGCAAAGEST: gi|32249937|gb|CD715756.1|CD715756
genomic: ACAGTGTTATTGGGGTCTGTCATCGTGATATCAAGCCTCAGAATTTATTGgtaagctttt ... catgccgcagGTCAATCCCCAGACTCATCAGCTAAAGATATGTGATTTTGGGAGTGCAAAG
EST: ACAGTGTTATTGGGGTCTGTCATCGTGATATCAAGCCTCAGAATTTATTG GTCAATCCCCAGACTCATCAGCTAAAGATATGTGATTTTGGGAGTGCAAAGEST: gi|161713339|gb|FC063356.1|FC063356
genomic: ACAGTGTTATTGGGGTCTGTCATCGTGATATCAAGCCTCAGAATTTATTGgtaagctttt ... catgccgcagGTCAATCCCCAGACTCATCAGCTAAAGATATGTGATTTTGGGAGTGCAAAG
EST: ACAGTGTTATTGGGGTCTGTCATCGTGATATCAAGCCTCAGAATTTATTG GTCAATCCCCAGACTCATCAGCTAAAGATATGTGATTTTGGGAGTGCAAAGEST: gi|351026191|gb|FQ428203.1|FQ428203
genomic: ACAGTGTTATTGGGGTCTGTCATCGTGATATCAAGCCTCAGAATTTATTGgtaagctttt ... catgccgcagGTCAATCCCCAGACTCATCAGCTAAAGATATGTGATTTTGGGAGTGCAAAG
EST: ACAGTGTTATTGGGGTCTGTCATCGTGATATCAAGCCTCAGAATTTATTG GTCAATTCCCAGACTCEST: gi|71856597|gb|DT005652.1|DT005652
genomic: ACAGTGTTATTGGGGTCTGTCATCGTGATATCAAGCCTCAGAATTTATTGgtaagctttt ... catgccgcagGTCAATCCCCAGACTC
EST: ACAGTGTTATTGGGGTCTGTCATCGTGATATCAAGCCTCAGAATTTATTG GTCAATCCCCAGACTCATCAGCTAAAGATATGTGATTTTGGGAGTGCAAAGEST: gi|110732276|gb|EE107431.1|EE107431
genomic: ACAGTGTTATTGGGGTCTGTCATCGTGATATCAAGCCTCAGAATTTATTGgtaagctttt ... catgccgcagGTCAATCCCCAGACTCATCAGCTAAAGATATGTGATTTTGGGAGTGCAAAG
EST: ACAGTGTTATTGGGGTCTGTCATCGTGATATCAAGCCTCAGAATTTATTG GTCAATCCCCAGACTCATCAGCTAAAGATATGTGATTTTGGGAGTGCAAAGEST: gi|27579903|gb|CB002598.1|CB002598
genomic: ACAGTGTTATTGGGGTCTGTCATCGTGATATCAAGCCTCAGAATTTATTGgtaagctttt ... catgccgcagGTCAATCCCCAGACTCATCAGCTAAAGATATGTGATTTTGGGAGTGCAAAG
EST: ACAGTGTTATTGGGGTCTGTCATCGTGATATCAAGCCTCAGAATTTATTG GTCAATCCCCAGACTCATCAGCTAAAGATATGTGATTTTGGGAGTGCAAAG
genomic: ACAGTGTTATTGGGGTCTGTCATCGTGATATCAAGCCTCAGAATTTATTGgtaagctttt ... catgccgcagGTCAATCCCCAGACTCATCAGCTAAAGATATGTGATTTTGGGAGTGCAAAG
gttatctatatcttgtcaaagtatttaggttttgtggttttgatgcatgccgcagGTCAATCCCCAGACTCATCAGCTAAAGATATGTGATTTTGGGAGTGCAAAGAAGTTG
ttttgat putative branch site (score: 4)
aaagtattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcttttcttgagtatgaagaaagtgaaggtggaagttatgatttatgctgcaattattgtctcattagtagtatgtggtgataatcttgttctttgtattacattcatgttaaaatggtaaatttgttatctatatcttgtcaaagtatttaggttttgtggttttgatgcatgccgcagGTCAATCCCCAGACTCATCAGCTAAAGATATGTGATTTTGGGAGTGCAAAGAAGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
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