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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgatgtatttctggagctaattcctagtttgtactgtttattttttcaattgaaacttccttttaggcattctttttgaggaaaaagttcataagacacaacattatgccttttaaacatctcagGCAAAGACTTGAAAGCACACAGAAGGTGTTGGAACCTGTTCCTATTATTGGATTTCTCACAG

Basic information

species Vitis vinifera
transcript Vv15s0048g01140.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0048g01140.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA07G08700.1 (Glycine max), 3'ss of exon 6
---gtattgatgtatttctggagctaattcctagtttgtactgtttatttttt--caattgaaacttccttttaggcattctttttgaggaaaaagttcataagacacaacattatgccttttaaacatctcagGCAAAGACTTGAAAGCACACAGAAGGTGTTGGAACCTGTTCCTATTATTGGATTTCTCACAG
   | | |||| ||  | | |  |  |||  |    | |  |  | ||||| |  || || ||| ||  ||  |         ||  | |    ||   | | ||||| | | |||   |    ||  | | ||||||||||||||||||||  |||| || ||||| ||| ||||| | || |||||||||||||
gtagcaatgatttacattttgttcccattttttccctttctttatcattttgtaacacttcaaattt--ttgcaaattgctccttcaaagttggagaaaaaatgacactaaaatatcaat----aatgttttagGCAAAGACTTGAAAGCACGGAGAAAGTTTTGGAGCCTATTCCTGTCATAGGATTTCTCACAG

upper sequence: Vv15s0048g01140.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA03G02080.1 (Glycine max), 3'ss of exon 6
---gtattgatgtatttctggagctaattcctagtttgtactgtttattttttcaat-tgaaacttccttttaggcattctttttgaggaaaaagttcataagacacaacattatgccttttaaacatctcagGCAAAGACTTGAAAGCACACAGAAGGTGTTGGAACCTGTTCCTATTATTGGATTTCTCACAG
   | | |||| ||  |   |  || |||  |  |   |    || |  |||| |||     | ||  |   | |   || || | ||    |     | || |     |   ||   ||| |||  | | ||||||||||||||||||||  |||| || ||||||||| | ||| | || |||||||||||||
gtagcaatgatttaaattgtgttctcattttt--tccatttctttaacatttttaatgcttcattttttgcaacgtgctccttctaagttggag----aaaaaattattctaaatttttttaaaatgttttagGCAAAGACTTGAAAGCACTGAGAAAGTTTTGGAACCTATACCTGTCATGGGATTTCTCACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110372309|gb|EC936464.1|EC936464
EST:     TTGTGGGCACTTTACCTCATGAGAGATCCATTCTTTAGCAAGTATACCAG                         GCAAAGACTTGAAAGCACACAGAAGGTGTTGGAACCTGTTCCTATTATTGG
genomic: TTGTGGGCACTTTACCTCATGAGAGATCCATTCTTTAGCAAGTATACCAGgtattgatgt ... aacatctcagGCAAAGACTTGAAAGCACACAGAAGGTGTTGGAACCTGTTCCTATTATTGG
EST: gi|110418220|gb|EC984349.1|EC984349
EST:     TTGTGGGCACTTTACCTCATGAGAGATCCATTCTTTAGCAAGTATACCAG                         GCAAAGACTTGAAAGCACACAGAAGGTGTTGGAACCTGTTCCTATTATTGG
genomic: TTGTGGGCACTTTACCTCATGAGAGATCCATTCTTTAGCAAGTATACCAGgtattgatgt ... aacatctcagGCAAAGACTTGAAAGCACACAGAAGGTGTTGGAACCTGTTCCTATTATTGG
EST: gi|161709850|gb|FC059329.1|FC059329
EST:     CCTCATGAGAGATCCATTCTTTAGCAAGTATACCAG                         GCAAAGACTTGAAAGCACACAGAAGGTGTTGGAACCTGTTCCTATTATTGG
genomic: CCTCATGAGAGATCCATTCTTTAGCAAGTATACCAGgtattgatgt ... aacatctcagGCAAAGACTTGAAAGCACACAGAAGGTGTTGGAACCTGTTCCTATTATTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttttgaggaaaaagttcataagacacaacattatgccttttaaacatctcagGCAAAGACTTGAAAGCACACAGAAGGTGTTGGAACCTGTTCCTATTATTGGATTTCTCACAG
                                        ttttaaacat  TA-rich tract