Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttctcatatgctattttattccttcccatgaagttgtcagtttggccatttcatctctttattttattgctctcctttccctaagaaagctttttgtttttcctggacagCCTGATTCGTTTTACTTTAATGTACTTCCCTATGCTGAGGATGTTCAAGAATTTCAGTTTCCATCTTTCAGCAATCTTCCTTTGTCATGGCAGCCAAATG

Basic information

species Vitis vinifera
transcript Vv15s0048g00940.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0048g00940.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA05G25550.1 (Glycine max), 3'ss of exon 7
gtaagttctcatatgctattttattccttcccatgaagttgtcagtttggccatttcatctctttattttattgctctcctttccctaagaaagctttttgtttttcctggacagCCTGATTCGTTTTACTTTAATGTACTTCCCTATGCTGAGGATGTTCAAGAATTTCAGTTTCCATCTTTCAGCAATCTTCCTTTGTCATGGCAGCCAAATG
||| ||| |  | ||    ||| || |||    |  |  | |  ||||  |  |     || |  |||||    |||| | ||   ||   |   ||| |   ||| |||  ||||||||||| |||||||| ||||||||||| | |||||||||||| | ||| ||||| || || || ||||  ||| | ||    || ||||| |||||||
gtaggttttt-tctgtc--tttgtttcttgtatttta--tattggtttatctgtactggct-tcaattttgc--ctcttcattttttattta---tttcttagttttctgtgcagCCTGATTCATTTTACTTAAATGTACTTCCTTTTGCTGAGGATGTGCGAGAGTTTCAATTCCCTTCCTTCACTAATTTCCCAGCATCGTGGCAACCAAATG

upper sequence: Vv15s0048g00940.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA17G00970.1 (Glycine max), 3'ss of exon 6
gtaagttctcatatgctattttattccttcccatgaagttgtcagtttggccatttcatctctttattttattgctctcctttccctaagaaagctttttgtttttcctggacagCCTGATTCGTTTTACTTTAATGTACTTCCCTATGCTGAGGATGTTCAAGAATTTCAGTTTCCATCTTTCAGCAATCTTCCTTTGTCATGGCAGCCAAATG-------------------------------------------
              | | || | |  || |   |    || |    ||||     || ||  |||  |||||| ||  | | ||               || || | |||  ||||||||||| |||||||| ||||||||||| | |||||||||| |   ||| ||||| || ||    ||||  ||| | ||    || |||||||||||||                                           
--------------gtttttctgtctctgcttcttgtatttttgtattggtttgctcttcatttttatttatttcttgcttctc---------------tgattatgctgtgcagcctgattcattttacttaaatgtacttccttttgctgagGATTTGTGAGAGTTTCAATTCCC----TTCACTAATTTCCCAGCATCGTGGCAGCCAAATGGATTACAGCTAGAGGCTGCAGCTAACTTGATAAAAACGCTTGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttattttattgctctcctttccctaagaaagctttttgtttttcctggacagCCTGATTCGTTTTACTTTAATGTACTTCCCTATGCTGAGGATGTTCAAGAATTTCAGTTTCCATCTTTCAGCAATCTTCCTTTGTCATGGCAGCCAAATG
                                  ctttttgtttttcct  CT-rich tract
                                   tttttgttttt  TA-rich tract