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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttctcatgtgcaattttattacatcccttgaagttgttggttggtcacatcccttaagcaagcttgttggatttgctgcacagCCAGATTCATTTTACTTCAATGTACTTCCTTATGCTGAGGATGTTCGGGAATTTCAGTTTCCATCTTTCAGTAATCTCCCTGCATCGTGGCAGCCGAATG

Basic information

species Vitis vinifera
transcript Vv15s0048g00930.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0048g00930.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA05G25550.1 (Glycine max), 3'ss of exon 7
----------------gtaagttctcatgtgcaattttattacatcccttgaagttgttggttggtcacatcccttaagcaagcttgttggatttgctgcacagCCAGATTCATTTTACTTCAATGTACTTCCTTATGCTGAGGATGTTCGGGAATTTCAGTTTCCATCTTTCAGTAATCTCCCTGCATCGTGGCAGCCGAATG
                 |   ||||  | |   || ||  |  |||  |    | |     || | | | ||  ||        ||  |   ||| |||  ||||| |||||||||||||| ||||||||||||| |||||||||||| || || ||||| || || || |||| |||| |||| ||||||||||| || ||||
gtaggttttttctgtctttgtttcttgtattttatattggtttatctgtactggcttcaattttgcctcttcattttttatttatttcttagttttctgtgcagCCTGATTCATTTTACTTAAATGTACTTCCTTTTGCTGAGGATGTGCGAGAGTTTCAATTCCCTTCCTTCACTAATTTCCCAGCATCGTGGCAACCAAATG

upper sequence: Vv15s0048g00930.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA17G00970.1 (Glycine max), 3'ss of exon 6
gtaagttctcatgtgcaattttattacatcccttgaagttgttggttggtcacatcccttaa--gcaagcttgttggatt-tgctgcacagCCAGATTCATTTTACTTCAATGTACTTCCTTATGCTGAGGATGTTCGGGAATTTCAGTTTCCATCTTTCAGTAATCTCCCTGCATCGTGGCAGCCGAATG-------------------------------------------
    ||| |  |||      || ||  ||   ||| | | ||| | |  |||  |   || |   |  |||| |  |||| |||||  ||||| |||||||||||||| ||||||||||||| |||||||||| |  | || ||||| || ||    |||| |||| |||| |||||||||||||| ||||                                           
----gtttttctgtctctgcttcttgtattt-ttgtattggtttgctcttcatttttatttatttcttgcttctctgattatgctgtgcagcctgattcattttacttaaatgtacttccttttgctgagGATTTGTGAGAGTTTCAATTCCC----TTCACTAATTTCCCAGCATCGTGGCAGCCAAATGGATTACAGCTAGAGGCTGCAGCTAACTTGATAAAAACGCTTGA