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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacataatttcttcaaatcattttttcacattgatcttggtcaatagctgagcttgaacatcatctttgggtatcccttgggtttgatccctttttaacatatatggcaagtttttatgagcatcattttttatttacgtctggctttgtttcctgtgcacagGTTGTTCATTTCAAAGGATCAAGGAAACGCCTAATGTTGGAGTCTTGGAATTTCTTCATTTCCTCTTCTGACATTTCAGATATGTTATGCCTCATCTTAA

Basic information

species Vitis vinifera
transcript Vv15s0048g00310.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0048g00310.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA06G42210.1 (Glycine max), 3'ss of exon 4
gtacataatttcttcaaatcattttttcacattgatcttggtcaatagctgagcttgaacatcatctttgggtatcccttgggtttgatccctttttaacat-atatggcaagtttttatgagcatcattttttatttacgtctggctttgtttcctgtgcacagGTTGTTCATTTCAAAGGATCAAGGAAACGCCTAATGTTGGAGTCTTGGAATTTCTTCATTTCCTCTTCTGACATTTCAGATATGTTATGCCTCATCTTAA
                                                            |     |   | ||    |||||    |   ||||| || || ||||   |   |||||     | |||     ||||    |||| ||| |||   |    |||||||||||||| ||||||||||| ||||| |||||| | || |||||||| || |     || |||  |||  ||||||| |||||||| ||||| ||  
----------------------------------------------------------taaatgcttgaagttagaatttggg----aaatcttttaaagatgatatactatcgttttagttttaacatgcc--atttgttcctgg-tttatttttgggatgcagGTTGTTCATTTTAAAGGATCAAGAAAACGTCTAATGCTCGAATCTTGGAACTTTTATTCCTCATCTCTTGAGGTTTCAGACATGTTATGTCTCATTTTGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagtttttatgagcatcattttttatttacgtctggctttgtttcctgtgcacagGTTGTTCATTTCAAAGGATCAAGGAAACGCCTAATGTTGGAGTCTTGGAATTTCTTCATTTCCTCTTCTGACATTTCAGATATGTTATGCCTCATCTTAA
                                    ctttgtttcct  CT-rich tract
              atcattttttattta  TA-rich tract