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...ctagaataggggaatgtgtgaactacgcaaagtactaattaacttgttctttccagcaaacaccataaggatttcttttcacatgactttagtttgacagATTTAGGACTTCGGCAACCTAGATTGGAAGGAGAAGAGTATCTATCAGTTGTTGATGAATTAATGGAAGCTATTTTCACTCGTTGGCCCAAGGCTATTGT
species | Vitis vinifera |
transcript | Vv15s0046g03670.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TATGCTTGATGTTGGCACTAACAACCAAAGGCTTCTCGAAGATCGCCTTT ATTTAGGACTTCGGCAACCTAGATTGGAAGGAGAAGAGTATCTATCAGTTGEST: gi|110698263|gb|EE075598.1|EE075598
genomic: TATGCTTGATGTTGGCACTAACAACCAAAGGCTTCTCGAAGATCGCCTTTgtaagcagaa ... agtttgacagATTTAGGACTTCGGCAACCTAGATTGGAAGGAGAAGAGTATCTATCAGTTG
EST: TATGCTTGATGTTGGCACTAACAACCAAAGGCTTCTCGAAGATCGCCTTT ATTTAGGACTTCGGCAACCTAGATTGGAAGGAGAAGAGTATCTATCAGTTGEST: gi|161720282|gb|FC070543.1|FC070543
genomic: TATGCTTGATGTTGGCACTAACAACCAAAGGCTTCTCGAAGATCGCCTTTgtaagcagaa ... agtttgacagATTTAGGACTTCGGCAACCTAGATTGGAAGGAGAAGAGTATCTATCAGTTG
EST: TATGCTTGATGTTGGCACTAACAACCAAAGGCTTCTCGAAGATCGCCTTT ATTTAGGACTTCGGCAACCTAGATTGGAAGGAGAAGAGTATCTATCAGTTG
genomic: TATGCTTGATGTTGGCACTAACAACCAAAGGCTTCTCGAAGATCGCCTTTgtaagcagaa ... agtttgacagATTTAGGACTTCGGCAACCTAGATTGGAAGGAGAAGAGTATCTATCAGTTG
gttctttccagcaaacaccataaggatttcttttcacatgactttagtttgacagATTTAGGACTTCGGCAACCTAGATTGGAAGGAGAAGAGTATCTATCAGTTGTTGATGAATTAATGGAAGCTATTTTCACTCGTTGGCCCAAGGCTATTGT
atttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctagaataggggaatgtgtgaactacgcaaagtactaattaacttgttctttccagcaaacaccataaggatttcttttcacatgactttagtttgacagATTTAGGACTTCGGCAACCTAGATTGGAAGGAGAAGAGTATCTATCAGTTGTTGATGAATTAATGGAAGCTATTTTCACTCGTTGGCCCAAGGCTATTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - -gaatgtg
- - - - - - - - - - - ctacgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataagga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgac