Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagcaaagcagaaacctgaatagcagttattaatttacatttagattgatacgttcctctcttaatttcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGGGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG

Basic information

species Vitis vinifera
transcript Vv15s0046g03520.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0046g03520.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os04g58580.2 (Oryza sativa), 3'ss of exon 6
gttagcaaagcagaaacctgaatagcagttattaatttacatttagattgatacgttcctctcttaatttcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGGGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG
     ||  | | ||||||   ||  | ||   | |   ||   || |   || |  ||     ||| |  ||| ||||||| || || ||||||||||||||||| ||||| ||||| || || || ||| |||| || || || ||||| ||||||||||||||||||||||| |||
---gtcagtgaacaaacctatctactaattcccattgggcaac-agctccttatggaccaaa--taactgtttcatcagGGGTACATTCATAGAGTTCCGAAGTGGAATGCTGAATGTGTCGCCCATAGGGAGAAATTGTAGTCAAGAAGAACGTGATGAGTTTGAAAAGTATGATAAG

upper sequence: Vv15s0046g03520.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G165535_T05 (Zea mays), 3'ss of exon 7
gttagcaaagcagaaacctgaatagcagttattaatttacatt---tagattgatacgttc--ctctcttaatttc------ttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGGGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG
|| ||  ||  |    ||||   | |||||||  |||| ||||   | | | | |||  |   |  || |||| |       ||  ||||||| || || ||||||||||||||||| ||| | |||||||| || || ||  ||||||| ||||| ||||| || ||||| ||||| ||||| || |||
gtcagtcaattat---cctgtccaacagttat-gatttgcattagcttgttagttactattgaccttcataatattggctgattgctcagGGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGGAAGAAACTGTAGCCAAGAAGAACGGGATGAATTTGAGAAGTACGATAAG

upper sequence: Vv15s0046g03520.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA09G39800.1 (Glycine max), 3'ss of exon 7
-----------------gttagcaaagcagaaacctgaatagcagttattaatttacatttag--attgatacgttcctctcttaatttcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGGGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG
                 ||||  |          ||  ||    ||||| |  ||| ||  |    ||| |   |   |    |||     | || |||||||| ||||| |||||||| ||||||||||| ||||| ||||| ||||| |||||||| ||||| |||||  | ||||||||||| || |||||||||
gttagtgggattcagaggttaatattttttttttctagat--ttgttatgatgttatatgaaactgttggttactaattgatataacaatatttttagGGGAACATTTATGGAGTTCCGTAGTGGGATGCTGAATGTGTCACCTATTGGCCGAAACTGTAGCCAAGAAGAAAGAGATGAGTTTGAGAAATATGACAAG

upper sequence: Vv15s0046g03520.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA18G46390.1 (Glycine max), 3'ss of exon 7
------------------gttagcaaagcagaaacctgaatagcagttattaatttacatttag--attgatacgttcctctcttaatttcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGGGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG
                   |||  | |  | | |  |  | |   ||||| |  ||| ||  |    ||| |   |   |    |||  | || || |||||||| |||||||||||||| ||||||||||| ||||| ||||| ||||| ||||| || ||||| |||||  | ||||||||||| || |||||||| 
ggttagtgggattcagagattaatata-tatatatttttagatttgttataatgttatatgaaactgttggttactaattgatataaaatattttt-aGGGGAACATTTATAGAGTTCCGTAGTGGGATGCTGAATGTGTCACCTATTGGCCGAAATTGTAGCCAAGAAGAAAGAGATGAGTTTGAGAAATATGACAA-

upper sequence: Vv15s0046g03520.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT2G45790.1 (Arabidopsis thaliana), 3'ss of exon 5
gttagcaaagcagaaacctgaatagcagttattaatt-tacatttagattgatacg-----ttcctctctt--aatttct-tcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGGGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG
    | | | |    | |  | |   |||   ||||  |   |  | | ||||| |     ||  | ||||  ||||| | |    |||||||| ||||| || ||||||| ||| ||||||||||||||||| ||||| || ||||||||||| |||||  | ||||| ||||| |  ||||| |||
----gtataacgtggatccaactgctagtctctaatcatgtttgcaaagtgataagatgatttattttcttgaaatttgtatacatagGGGAACATTTATTGAATTCCGAAATGGAATGCTCAATGTATCACCCATTGGTCGCAACTGCAGCCAAGAAGAAAGAGATGAATTTGAGAGATATGATAAG

upper sequence: Vv15s0046g03520.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: PP1S137_89V6.1 (Physcomitrella patens), 3'ss of exon 5
----------gttagcaaagcagaaacctgaatagcagttattaatttaca---tttagattgatacgttcctc--------tcttaatttcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGGGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG
          || | ||  |  ||    ||  |   |  |  |   |  ||   ||||   | | |   |  |           ||  || |     ||||||||| ||  | ||||| || |  || ||||||||||| || ||||| || || ||||||||||| ||||||||||| ||||||||    ||||| |||
gaatgcctctgtcatcagcgttgatgtgtgtttctgaacttctggctcgcaagctttaagcttagagactatttaacaccagcattgtttgcaatgacagGGGAACTTTCGTCGAGTTTCGCATGGGTATGCTCAATGTTTCTCCAATCGGCCGCAACTGCAGCCAAGAAGAGCGTGACGAGTTTGAGCGTTATGATAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110415834|gb|EC981772.1|EC981772
EST:     ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAG                         GGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
genomic: ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAGgttagcaaag ... tcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
EST: gi|351037054|gb|FQ465046.1|FQ465046
EST:     ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAG                         GGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
genomic: ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAGgttagcaaag ... tcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
EST: gi|30255051|gb|CB971498.1|CB971498
EST:     ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAG                         GGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
genomic: ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAGgttagcaaag ... tcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
EST: gi|110701264|gb|EE078642.1|EE078642
EST:     ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAG                         GGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
genomic: ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAGgttagcaaag ... tcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
EST: gi|351014077|gb|FQ434229.1|FQ434229
EST:     ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAG                         GGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
genomic: ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAGgttagcaaag ... tcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
EST: gi|71870941|gb|DT019996.1|DT019996
EST:     ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAG                         GGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
genomic: ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAGgttagcaaag ... tcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
EST: gi|22015208|gb|BQ800242.1|BQ800242
EST:     ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAG                         GGG-ACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
genomic: ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAGgttagcaaag ... tcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
EST: gi|351029490|gb|FQ436884.1|FQ436884
EST:     ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAG                         GGGAACCTTTATAGAGTTCCGAAGTGGGATGCCCAATGTATCACCAATTGG
genomic: ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAGgttagcaaag ... tcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
EST: gi|30254563|gb|CB971308.1|CB971308
EST:     TGGATATCCCAATAAAAAG                         GGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
genomic: TGGATATCCCAATAAAAAGgttagcaaag ... tcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
EST: gi|110722626|gb|EE099031.1|EE099031
EST:     ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAG                         GGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
genomic: ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAGgttagcaaag ... tcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
EST: gi|110689404|gb|EE065600.1|EE065600
EST:     ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAG                         GGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
genomic: ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAGgttagcaaag ... tcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
EST: gi|294966590|gb|GW837725.1|GW837725
EST:     ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAG                         GGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
genomic: ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAGgttagcaaag ... tcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
EST: gi|351052425|gb|FQ452458.1|FQ452458
EST:     ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAG                         GGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
genomic: ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAGgttagcaaag ... tcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
EST: gi|30253435|gb|CB970986.1|CB970986
EST:     GGATATCCCAATAAAAAG                         GGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
genomic: GGATATCCCAATAAAAAGgttagcaaag ... tcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
EST: gi|110369745|gb|EC933913.1|EC933913
EST:     ATTAATTTCACACTTCATTATATTGCCGACTTGGATATCCCAATAAAAAG                         GGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
genomic: ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAGgttagcaaag ... tcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
EST: gi|110377595|gb|EC942672.1|EC942672
EST:     TTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAG                         GGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
genomic: TTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAGgttagcaaag ... tcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
EST: gi|30323265|gb|CD006527.1|CD006527
EST:     ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAG                         GGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
genomic: ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAGgttagcaaag ... tcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
EST: gi|30296186|gb|CB972980.1|CB972980
EST:     ATTAATTTCACACTTCATTATATTGCCGACTTGGATATCCCAATAAAAAG                         GGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
genomic: ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAGgttagcaaag ... tcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
EST: gi|110374344|gb|EC939025.1|EC939025
EST:     ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAG                         GGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
genomic: ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAGgttagcaaag ... tcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
EST: gi|349826399|gb|FQ417896.1|FQ417896
EST:     ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAG                         GGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
genomic: ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAGgttagcaaag ... tcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
EST: gi|349822047|gb|FQ408376.1|FQ408376
EST:     ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAG                         GGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
genomic: ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAGgttagcaaag ... tcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
EST: gi|30253357|gb|CB970908.1|CB970908
EST:     ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAG                         GGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
genomic: ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAGgttagcaaag ... tcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
EST: gi|351056098|gb|FQ453560.1|FQ453560
EST:     ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAG                         GGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
genomic: ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAGgttagcaaag ... tcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
EST: gi|349808339|gb|FQ405483.1|FQ405483
EST:     ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAG                         GGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
genomic: ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAGgttagcaaag ... tcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
EST: gi|30254481|gb|CB971226.1|CB971226
EST:     ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAG                         GGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
genomic: ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAGgttagcaaag ... tcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
EST: gi|156736254|gb|EV240375.1|EV240375
EST:     ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAG                         GGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
genomic: ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAGgttagcaaag ... tcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
EST: gi|110388071|gb|EC952787.1|EC952787
EST:     ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAG                         GGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
genomic: ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAGgttagcaaag ... tcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
EST: gi|349824204|gb|FQ417591.1|FQ417591
EST:     ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAG                         GGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
genomic: ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAGgttagcaaag ... tcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
EST: gi|37189632|gb|CF608981.1|CF608981
EST:     ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAG                         GGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
genomic: ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAGgttagcaaag ... tcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
EST: gi|351019470|gb|FQ429605.1|FQ429605
EST:     ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAG                         GGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
genomic: ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAGgttagcaaag ... tcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
EST: gi|27579428|gb|CB002123.1|CB002123
EST:     ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAG                         GGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
genomic: ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAGgttagcaaag ... tcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
EST: gi|33408487|gb|CF214114.1|CF214114
EST:     ATTAATTTCACACTTCATTATATTGCCGACTTGGATATCCCAATAAAAAG                         GGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
genomic: ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAGgttagcaaag ... tcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
EST: gi|27580564|gb|CB003259.1|CB003259
EST:     ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAG                         GGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
genomic: ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAGgttagcaaag ... tcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
EST: gi|110384439|gb|EC948876.1|EC948876
EST:     ATTAATTTCACACTTCATTATATTGCCGACTTGGATATCCCAATAAAAAG                         GGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
genomic: ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAGgttagcaaag ... tcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
EST: gi|351053383|gb|FQ455719.1|FQ455719
EST:     ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAG                         GGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
genomic: ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAGgttagcaaag ... tcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
EST: gi|77584263|gb|DV221204.1|DV221204
EST:     ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAG                         GGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
genomic: ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAGgttagcaaag ... tcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
EST: gi|110708707|gb|EE086556.1|EE086556
EST:     ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAG                         GGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
genomic: ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAGgttagcaaag ... tcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
EST: gi|351019263|gb|FQ429423.1|FQ429423
EST:     ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAG                         GGGAACCTTTATAGAGTTCCGAAGTGG-ATGCTCAATGTATCACCAATTGG
genomic: ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAGgttagcaaag ... tcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
EST: gi|71867285|gb|DT016340.1|DT016340
EST:     ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAG                         GGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
genomic: ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAGgttagcaaag ... tcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
EST: gi|349833445|gb|FQ420191.1|FQ420191
EST:     ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAG                         GGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
genomic: ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAGgttagcaaag ... tcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
EST: gi|161717186|gb|FC064703.1|FC064703
EST:     ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAG                         GGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
genomic: ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAGgttagcaaag ... tcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
EST: gi|33406828|gb|CF212455.1|CF212455
EST:     ATTAATTTCACACTTCATTATATTGCCGACTTGGATATCCCAATAAAAAG                         GGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCGCCAATTGG
genomic: ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAGgttagcaaag ... tcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
EST: gi|27579427|gb|CB002122.1|CB002122
EST:     ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAG                         GGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
genomic: ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAGgttagcaaag ... tcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
EST: gi|110400084|gb|EC966626.1|EC966626
EST:     ATTAATTTCACACTTCATTATATTGCCGACTTGGATATCCCAATAAAAAG                         GGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
genomic: ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAGgttagcaaag ... tcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
EST: gi|33406730|gb|CF212357.1|CF212357
EST:     ATTATATTGCCGACTTGGATATCCCAATAAAAAG                         GGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCGCCAATTGG
genomic: ATTATATTGCTGACTTGGATATCCCAATAAAAAGgttagcaaag ... tcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
EST: gi|33410547|gb|CF216174.1|CF216174
EST:     ATTAATTTCACACTTCATTATATTGCCGACTTGGATATCCCAATAAAAAG                         GGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
genomic: ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAGgttagcaaag ... tcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
EST: gi|110707835|gb|EE084684.1|EE084684
EST:     ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAG                         GGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG
genomic: ATTAATTTCACACTTCATTATATTGCTGACTTGGATATCCCAATAAAAAGgttagcaaag ... tcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcagttattaatttacatttagattgatacgttcctctcttaatttcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGGGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG
                             cgttcctctcttaatt  CT-rich tract
     tattaatttacattta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttagcaaagcagaaacctgaatagcagttattaatttacatttagattgatacgttcctctcttaatttcttcttcagGGGAACCTTTATAGAGTTCCGAAGTGGGATGCTCAATGTATCACCAATTGGGCGAAACTGCAGCCAGGAAGAGCGTGATGAGTTTGAAAAGTATGACAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA