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...gatttgatgtagagtctgtatcagatataatataggaataatatatggtattttgtaatctaactaatttttgcttcatatgcttgtttttgttctatagGAAGAGTAACACCAGAAAGTGTAATATATAGCTTCGGCACTCTTTTGCTTGACCTGCTCAGTGGAAAGCATATCCCTCCCAGCCAT
species | Vitis vinifera |
transcript | Vv15s0046g02900.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAGTTATAGTACGAATCTGGCGTTTACTCCTCCTGAGTATTTGAGAACTG GAAGAGTAACACCAGAAAGTGTAATATATAGCTTCGGCACTCTTTTGCTTGEST: gi|110419869|gb|EC986123.1|EC986123
genomic: AAGTTATAGTACGAATCTGGCGTTTACTCCTCCTGAGTATTTGAGAACTGgtatgtacct ... tgttctatagGAAGAGTAACACCAGAAAGTGTAATATATAGCTTCGGCACTCTTTTGCTTG
EST: AAGTTATAGTACGAATCTGGCGTTTACTCCTCCTGAGTATTTGAGAACTG GAAGAGTAACACCAGAAAGTGTAATATATAGCTTCGGCACTCTTTTGCTTGEST: gi|110400308|gb|EC966866.1|EC966866
genomic: AAGTTATAGTACGAATCTGGCGTTTACTCCTCCTGAGTATTTGAGAACTGgtatgtacct ... tgttctatagGAAGAGTAACACCAGAAAGTGTAATATATAGCTTCGGCACTCTTTTGCTTG
EST: AAGTTATAGTACGAATCTGGCGTTTACTCCTCCTGAGTATTTGAGAACTG GAAGAGTAACACCAGAAAGTGTAATATATAGCTTCGGCACTCTTTTGCTTG
genomic: AAGTTATAGTACGAATCTGGCGTTTACTCCTCCTGAGTATTTGAGAACTGgtatgtacct ... tgttctatagGAAGAGTAACACCAGAAAGTGTAATATATAGCTTCGGCACTCTTTTGCTTG
tggtattttgtaatctaactaatttttgcttcatatgcttgtttttgttctatagGAAGAGTAACACCAGAAAGTGTAATATATAGCTTCGGCACTCTTTTGCTTGACCTGCTCAGTGGAAAGCATATCCCTCCCAGCCAT
aactaat putative branch site (score: 2)
cttgtttttgttct putative PPT
ttttgtaatctaacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatttgatgtagagtctgtatcagatataatataggaataatatatggtattttgtaatctaactaatttttgcttcatatgcttgtttttgttctatagGAAGAGTAACACCAGAAAGTGTAATATATAGCTTCGGCACTCTTTTGCTTGACCTGCTCAGTGGAAAGCATATCCCTCCCAGCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - ggaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttgt